Restriction map for
pFN21AE0827
(Circular) (Six-base) MAPSORT of: pFN21AE0827.seq Check: 7049 from: 1 to: 5365
pFN21AE0827 5365 bp
With 182 enzymes: SgfI *
October 20, 2009 10:52 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3175 278
Size: 53 83 186 936 1639 2468
Fragments arranged by size:
2468 1639 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2426 2708 1937
Size: 489 282 4594
Fragments arranged by size:
4594 489 282
Acc65I G'GTAC_C
Cuts at: 2686 2686
Size: 5365
AclI AA'CG_TT
Cuts at: 1563 3492 3865 1563
Size: 1929 373 3063
Fragments arranged by size:
3063 1929 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3428 4812 5080 1632
Size: 1796 1384 268 1917
Fragments arranged by size:
1917 1796 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5168
AflIII A'CryG_T
Cuts at: 1203 2253 2574 4264 5241 1203
Size: 1050 321 1690 977 1327
Fragments arranged by size:
1690 1327 1050 977 321
AgeI A'CCGG_T
Cuts at: 4196 4196
Size: 5365
AhdI GACnn_n'nnGTC
Cuts at: 4094 4094
Size: 5365
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5365
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5365
AlwNI CAG_nnn'CTG
Cuts at: 3108 4680 3108
Size: 1572 3793
ApaLI G'TGCA_C
Cuts at: 2278 3422 4578 2278
Size: 1144 1156 3065
Fragments arranged by size:
3065 1156 1144
ApoI r'AATT_y
Cuts at: 1493 2519 2584 2674 2900 3052 5161 1493
Size: 1026 65 90 226 152 2109 1697
Fragments arranged by size:
2109 1697 1026 226 152 90 65
AseI AT'TA_AT
Cuts at: 160 1032 3919 160
Size: 872 2887 1606
Fragments arranged by size:
2887 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5365
AvaI C'yCGr_G
Cuts at: 1870 1943 2690 1870
Size: 73 747 4545
Fragments arranged by size:
4545 747 73
BamHI G'GATC_C
Cuts at: 2695 3062 2695
Size: 367 4998
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2686 4141 618
Size: 325 217 627 899 1455 1842
Fragments arranged by size:
1842 1455 899 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2684 1391
Size: 1293 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2201 928
Size: 971 302 4092
Fragments arranged by size:
4092 971 302
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3556 3590 1903
Size: 34 1619 34 3678
Fragments arranged by size:
3678 1619 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3257 4467 3257
Size: 1210 4155
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5365
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3976 136
Size: 107 122 71 631 605 2304 1525
Fragments arranged by size:
2304 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2046 5360 2046
Size: 3314 2051
BlpI GC'TnA_GC
Cuts at: 2782 2782
Size: 5365
Bme1580I G_kGCm'C
Cuts at: 1790 2282 3426 4582 1790
Size: 492 1144 1156 2573
Fragments arranged by size:
2573 1156 1144 492
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5365
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3096 4054 442
Size: 416 53 83 399 24 1679 958 1753
Fragments arranged by size:
1753 1679 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5365
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2672 2672
Size: 5365
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2184 4025 1239
Size: 945 1841 2579
Fragments arranged by size:
2579 1841 945
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3490 4355 4653 3490
Size: 865 298 4202
Fragments arranged by size:
4202 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4028 882
Size: 617 2529 2219
Fragments arranged by size:
2529 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2083 3156 493
Size: 711 879 1073 2702
Fragments arranged by size:
2702 1073 879 711
BsaBI GATnn'nnATC
Cuts at: 5359 5359
Size: 5365
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3172 3554 4189 275
Size: 53 83 186 936 1639 382 635 1451
Fragments arranged by size:
1639 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3798 4196 4470 4617 5028 3798
Size: 398 274 147 411 4135
Fragments arranged by size:
4135 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5140
Fragments arranged by size:
5140 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2648 1186
Size: 1462 3903
BseYI C'CCAG_C
Cuts at: 4568 5064 4568
Size: 496 4869
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2087 1163
Size: 573 351 4441
Fragments arranged by size:
4441 573 351
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2815 3576 4604 1540
Size: 275 186 814 761 1028 2301
Fragments arranged by size:
2301 1028 814 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2282 3426 3511 4582 2282
Size: 1144 85 1071 3065
Fragments arranged by size:
3065 1144 1071 85
BsmI GAATG_Cn'
Cuts at: 2876 2969 2876
Size: 93 5272
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2282 2684 3426 3511 4582 1391
Size: 399 492 402 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 492 402 399 85
BspEI T'CCGG_A
Cuts at: 5028 5028
Size: 5365
BspHI T'CATG_A
Cuts at: 2118 3254 4984 2118
Size: 1136 1730 2499
Fragments arranged by size:
2499 1730 1136
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2438 2720 844
Size: 1594 282 3489
Fragments arranged by size:
3489 1594 282
BsrBI CCG'CTC
Cuts at: 1394 1823 3252 1394
Size: 429 1429 3507
Fragments arranged by size:
3507 1429 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2334 3860 4034 65
Size: 1183 1086 1526 174 1396
Fragments arranged by size:
1526 1396 1183 1086 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4009 4196 1700
Size: 110 2199 187 2869
Fragments arranged by size:
2869 2199 187 110
BsrGI T'GTAC_A
Cuts at: 96 2202 96
Size: 2106 3259
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5365
BssSI C'ACGA_G
Cuts at: 3425 4437 3425
Size: 1012 4353
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5365
BstBI TT'CG_AA
Cuts at: 4169 4169
Size: 5365
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5365
BstXI CCAn_nnnn'nTGG
Cuts at: 2033 2033
Size: 5365
BstYI r'GATC_y
Cuts at: 1972 2046 2695 3062 3447 3464 4916 5002 5014
Size: 74 649 367 385 17 1452 86 12
Cuts at: 5014 5360 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 649 385 367 346 86 74
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2448 513
Size: 552 939 444 3430
Fragments arranged by size:
3430 939 552 444
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4626
Fragments arranged by size:
4626 683 56
BtsI GCAGTG_nn'
Cuts at: 2099 2881 3675 3695 2099
Size: 782 794 20 3769
Fragments arranged by size:
3769 794 782 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5365
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5330
DraI TTT'AAA
Cuts at: 2669 2669
Size: 5365
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4372 809
Size: 507 3056 1802
Fragments arranged by size:
3056 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2085 2154 2812
Size: 54 1425 50 275 18 255 69 658
Cuts at: 2812 3701 5330 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 658 275 255 69 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2812 1537
Size: 275 1000 4090
Fragments arranged by size:
4090 1000 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3295 1353
Size: 1942 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3952 4326 4472 387
Size: 1064 138 2363 374 146 1280
Fragments arranged by size:
2363 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2184 3428 4025 4812 5080 1239
Size: 393 552 1244 597 787 268 1524
Fragments arranged by size:
1524 1244 787 597 552 393 268
EcoRI G'AATT_C
Cuts at: 2674 3052 2674
Size: 378 4987
FspI TGC'GCA
Cuts at: 3871 3871
Size: 5365
HaeII r_GCGC'y
Cuts at: 1678 4512 1678
Size: 2834 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4006 4038 4080 4112 1373
Size: 32 135 32 2434 32 42 32 2626
Fragments arranged by size:
2626 2434 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2709 2955 669
Size: 988 281 771 246 3079
Fragments arranged by size:
3079 988 771 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5365
HpaI GTT'AAC
Cuts at: 2955 2955
Size: 5365
KpnI G_GTAC'C
Cuts at: 2690 2690
Size: 5365
MfeI C'AATT_G
Cuts at: 2964 2964
Size: 5365
MluI A'CGCG_T
Cuts at: 5241 5241
Size: 5365
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4479 4663 1305
Size: 3174 184 2007
Fragments arranged by size:
3174 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2087 2156 10
Size: 54 1425 343 255 69 3219
Fragments arranged by size:
3219 1425 343 255 69 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2447 2552 3323 3682 3841 518
Size: 648 1281 105 771 359 159 2042
Fragments arranged by size:
2042 1281 771 648 359 159 105
MspA1I CmG'CkG
Cuts at: 1606 2781 3458 4606 4851 1606
Size: 1175 677 1148 245 2120
Fragments arranged by size:
2120 1175 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3874
Fragments arranged by size:
3874 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5365
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5365
NotI GC'GGCC_GC
Cuts at: 2812 2812
Size: 5365
NspI r_CATG'y
Cuts at: 1132 1229 2257 2723 4268 1132
Size: 97 1028 466 1545 2229
Fragments arranged by size:
2229 1545 1028 466 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5365
PciI A'CATG_T
Cuts at: 2253 4264 2253
Size: 2011 3354
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5365
PmeI GTTT'AAAC
Cuts at: 2669 2669
Size: 5365
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3434 3466 4947 4979 3434
Size: 32 1481 32 3820
Fragments arranged by size:
3820 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5365
PsiI TTA'TAA
Cuts at: 2935 2935
Size: 5365
PstI C_TGCA'G
Cuts at: 830 2435 2717 830
Size: 1605 282 3478
Fragments arranged by size:
3478 1605 282
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5365
SalI G'TCGA_C
Cuts at: 1936 2707 1936
Size: 771 4594
SbfI CC_TGCA'GG
Cuts at: 2717 2717
Size: 5365
ScaI AGT'ACT
Cuts at: 3613 5325 3613
Size: 1712 3653
SfcI C'TryA_G
Cuts at: 826 1045 2307 2431 2634 2713 3848 4529 4720
Size: 219 1262 124 203 79 1135 681 191
Cuts at: 4720 826
Size: 1471
Fragments arranged by size:
1471 1262 1135 681 219 203 191 124
79
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5365
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5365
SmaI CCC'GGG
Cuts at: 1872 2692 1872
Size: 820 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3469 4370 4632 820
Size: 197 926 1526 901 262 1553
Fragments arranged by size:
1553 1526 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3156 493
Size: 2663 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5365
SphI G_CATG'C
Cuts at: 1132 2723 1132
Size: 1591 3774
SspI AAT'ATT
Cuts at: 5 52 3289 5
Size: 47 3237 2081
Fragments arranged by size:
3237 2081 47
StuI AGG'CCT
Cuts at: 1517 2301 1517
Size: 784 4581
StyI C'CwwG_G
Cuts at: 513 1065 2004 2804 513
Size: 552 939 800 3074
Fragments arranged by size:
3074 939 800 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2566 3392 3409 3562 3747 4192 325
Size: 1255 986 826 17 153 185 445 1498
Fragments arranged by size:
1498 1255 986 826 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2202 3611 5323
Size: 274 80 33 51 1443 225 1409 1712
Cuts at: 5323 96
Size: 138
Fragments arranged by size:
1712 1443 1409 274 225 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2261 2293 5325 5357 2261
Size: 32 3032 32 2269
Fragments arranged by size:
3032 2269 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5365
XbaI T'CTAG_A
Cuts at: 2701 2701
Size: 5365
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2033 2143 2033
Size: 110 5255
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5365
XmaI C'CCGG_G
Cuts at: 1870 2690 1870
Size: 820 4545
XmnI GAAnn'nnTTC
Cuts at: 3494 3494
Size: 5365
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3173 276
Size: 53 83 186 936 1639 2468
Fragments arranged by size:
2468 1639 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI