Restriction map for
pFN21AE0532
(Circular) (Six-base) MAPSORT of: pFN21AE0532.seq Check: 5709 from: 1 to: 5167
pFN21AE0532 5167 bp
With 182 enzymes: SgfI *
October 20, 2009 10:49 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2977 278
Size: 53 83 186 936 1441 2468
Fragments arranged by size:
2468 1441 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2510 1937
Size: 573 4594
Acc65I G'GTAC_C
Cuts at: 2488 2488
Size: 5167
AclI AA'CG_TT
Cuts at: 1563 3294 3667 1563
Size: 1731 373 3063
Fragments arranged by size:
3063 1731 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3230 4614 4882 1632
Size: 1598 1384 268 1917
Fragments arranged by size:
1917 1598 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4970
AflIII A'CryG_T
Cuts at: 1203 2386 4066 5043 1203
Size: 1183 1680 977 1327
Fragments arranged by size:
1680 1327 1183 977
AgeI A'CCGG_T
Cuts at: 3998 3998
Size: 5167
AhdI GACnn_n'nnGTC
Cuts at: 3896 3896
Size: 5167
AleI CACnn'nnGTG
Cuts at: 1166 2129 1166
Size: 963 4204
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5167
AlwNI CAG_nnn'CTG
Cuts at: 2910 4482 2910
Size: 1572 3595
ApaLI G'TGCA_C
Cuts at: 2222 3224 4380 2222
Size: 1002 1156 3009
Fragments arranged by size:
3009 1156 1002
ApoI r'AATT_y
Cuts at: 1493 2476 2702 2854 4963 1493
Size: 983 226 152 2109 1697
Fragments arranged by size:
2109 1697 983 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3721 160
Size: 872 2689 1606
Fragments arranged by size:
2689 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5167
AvaI C'yCGr_G
Cuts at: 1870 1943 2492 1870
Size: 73 549 4545
Fragments arranged by size:
4545 549 73
BamHI G'GATC_C
Cuts at: 2497 2864 2497
Size: 367 4800
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2209 2488 3943 618
Size: 325 217 627 422 279 1455 1842
Fragments arranged by size:
1842 1455 627 422 325 279 217
BanII G_rGCy'C
Cuts at: 1391 2187 2486 1391
Size: 796 299 4072
Fragments arranged by size:
4072 796 299
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4196
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2203 2237 3358 3392 1903
Size: 34 266 34 1121 34 3678
Fragments arranged by size:
3678 1121 266 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3059 4269 3059
Size: 1210 3957
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5167
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3778 136
Size: 107 122 71 631 605 2106 1525
Fragments arranged by size:
2106 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5162 5162
Size: 5167
BlpI GC'TnA_GC
Cuts at: 2584 2584
Size: 5167
Bme1580I G_kGCm'C
Cuts at: 1790 2226 3228 4384 1790
Size: 436 1002 1156 2573
Fragments arranged by size:
2573 1156 1002 436
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5167
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2898 3856 442
Size: 416 53 83 399 24 1481 958 1753
Fragments arranged by size:
1753 1481 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5167
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3827 1239
Size: 2588 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3292 4157 4455 3292
Size: 865 298 4004
Fragments arranged by size:
4004 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3830 882
Size: 617 2331 2219
Fragments arranged by size:
2331 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2958 493
Size: 711 1754 2702
Fragments arranged by size:
2702 1754 711
BsaBI GATnn'nnATC
Cuts at: 5161 5161
Size: 5167
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2097 2974 3356 3991
Size: 53 83 186 936 564 877 382 635
Cuts at: 3991 275
Size: 1451
Fragments arranged by size:
1451 936 877 635 564 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3600 3998 4272 4419 4830 3600
Size: 398 274 147 411 3937
Fragments arranged by size:
3937 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4942
Fragments arranged by size:
4942 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5167
BseYI C'CCAG_C
Cuts at: 4370 4866 4370
Size: 496 4671
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4594
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2617 3378 4406 1540
Size: 275 186 616 761 1028 2301
Fragments arranged by size:
2301 1028 761 616 275 186
BsiHKAI G_wGCw'C
Cuts at: 2187 2226 3228 3313 4384 2187
Size: 39 1002 85 1071 2970
Fragments arranged by size:
2970 1071 1002 85 39
BsmI GAATG_Cn'
Cuts at: 2296 2678 2771 2296
Size: 382 93 4692
Fragments arranged by size:
4692 382 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2187 2226 2486 3228 3313 4384 1391
Size: 399 397 39 260 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 397 260 85 39
BspEI T'CCGG_A
Cuts at: 4830 4830
Size: 5167
BspHI T'CATG_A
Cuts at: 3056 4786 3056
Size: 1730 3437
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2522 844
Size: 1678 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2094 3054 1394
Size: 429 271 960 3507
Fragments arranged by size:
3507 960 429 271
BsrDI GCAATG_nn'
Cuts at: 65 1248 3662 3836 65
Size: 1183 2414 174 1396
Fragments arranged by size:
2414 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3811 3998 1700
Size: 110 2001 187 2869
Fragments arranged by size:
2869 2001 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5167
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5167
BssSI C'ACGA_G
Cuts at: 3227 4239 3227
Size: 1012 4155
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2039 794
Size: 1245 3922
BstBI TT'CG_AA
Cuts at: 3971 3971
Size: 5167
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5167
BstYI r'GATC_y
Cuts at: 1972 2497 2864 3249 3266 4718 4804 4816 5162
Size: 525 367 385 17 1452 86 12 346
Cuts at: 5162 1972
Size: 1977
Fragments arranged by size:
1977 1452 525 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2024 513
Size: 552 939 20 3656
Fragments arranged by size:
3656 939 552 20
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4428
Fragments arranged by size:
4428 683 56
BtsI GCAGTG_nn'
Cuts at: 2683 3477 3497 2683
Size: 794 20 4353
Fragments arranged by size:
4353 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5167
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5132
DraI TTT'AAA
Cuts at: 2471 2471
Size: 5167
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4174 809
Size: 507 2858 1802
Fragments arranged by size:
2858 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2455 2614 3503
Size: 54 1425 50 275 18 625 159 889
Cuts at: 3503 5132 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 625 275 159 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2614 1537
Size: 275 802 4090
Fragments arranged by size:
4090 802 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3097 1353
Size: 1744 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2090 3754 4128 4274 387
Size: 1064 138 501 1664 374 146 1280
Fragments arranged by size:
1664 1280 1064 501 374 146 138
EcoICRI GAG'CTC
Cuts at: 2185 2185
Size: 5167
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3230 3827 4614 4882 1239
Size: 393 1598 597 787 268 1524
Fragments arranged by size:
1598 1524 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2476 2854 2476
Size: 378 4789
FspI TGC'GCA
Cuts at: 3673 3673
Size: 5167
HaeII r_GCGC'y
Cuts at: 1678 2420 4314 1678
Size: 742 1894 2531
Fragments arranged by size:
2531 1894 742
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2423 2455 3808 3840 3882
Size: 32 135 32 851 32 1353 32 42
Cuts at: 3882 3914 1373
Size: 32 2626
Fragments arranged by size:
2626 1353 851 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2511 2757 669
Size: 988 281 573 246 3079
Fragments arranged by size:
3079 988 573 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5167
HpaI GTT'AAC
Cuts at: 2757 2757
Size: 5167
KpnI G_GTAC'C
Cuts at: 2492 2492
Size: 5167
MfeI C'AATT_G
Cuts at: 2766 2766
Size: 5167
MluI A'CGCG_T
Cuts at: 5043 5043
Size: 5167
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4281 4465 1305
Size: 2976 184 2007
Fragments arranged by size:
2976 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2457 10
Size: 54 1425 343 625 2720
Fragments arranged by size:
2720 1425 625 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2129 2246 3125 3484 3643 518
Size: 648 963 117 879 359 159 2042
Fragments arranged by size:
2042 963 879 648 359 159 117
MspA1I CmG'CkG
Cuts at: 1606 2026 2236 2380 2583 3260 4408 4653 1606
Size: 420 210 144 203 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 420 245 210 203 144
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3676
Fragments arranged by size:
3676 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5167
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5167
NotI GC'GGCC_GC
Cuts at: 2614 2614
Size: 5167
NspI r_CATG'y
Cuts at: 1132 1229 2390 2525 4070 1132
Size: 97 1161 135 1545 2229
Fragments arranged by size:
2229 1545 1161 135 97
PasI CC'CwG_GG
Cuts at: 1348 2310 1348
Size: 962 4205
PciI A'CATG_T
Cuts at: 2386 4066 2386
Size: 1680 3487
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5167
PmeI GTTT'AAAC
Cuts at: 2471 2471
Size: 5167
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3236 3268 4749 4781 3236
Size: 32 1481 32 3622
Fragments arranged by size:
3622 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5167
PsiI TTA'TAA
Cuts at: 2737 2737
Size: 5167
PstI C_TGCA'G
Cuts at: 830 2519 830
Size: 1689 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5167
PvuII CAG'CTG
Cuts at: 2236 2236
Size: 5167
RsrII CG'GwC_CG
Cuts at: 2028 2028
Size: 5167
SacI G_AGCT'C
Cuts at: 2187 2187
Size: 5167
SacII CC_GC'GG
Cuts at: 2027 2027
Size: 5167
SalI G'TCGA_C
Cuts at: 1936 2509 1936
Size: 573 4594
SbfI CC_TGCA'GG
Cuts at: 2519 2519
Size: 5167
ScaI AGT'ACT
Cuts at: 3415 5127 3415
Size: 1712 3455
SfcI C'TryA_G
Cuts at: 826 1045 2515 3650 4331 4522 826
Size: 219 1470 1135 681 191 1471
Fragments arranged by size:
1471 1470 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5167
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5167
SmaI CCC'GGG
Cuts at: 1872 2494 1872
Size: 622 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3271 4172 4434 820
Size: 197 926 1328 901 262 1553
Fragments arranged by size:
1553 1328 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2958 493
Size: 2465 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5167
SphI G_CATG'C
Cuts at: 1132 2525 1132
Size: 1393 3774
SspI AAT'ATT
Cuts at: 5 52 3091 5
Size: 47 3039 2081
Fragments arranged by size:
3039 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5167
StyI C'CwwG_G
Cuts at: 513 1065 2004 2420 2606 513
Size: 552 939 416 186 3074
Fragments arranged by size:
3074 939 552 416 186
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3194 3211 3364 3549 3994 325
Size: 1255 1614 17 153 185 445 1498
Fragments arranged by size:
1614 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3413 5125 96
Size: 274 80 33 51 1443 1436 1712 138
Fragments arranged by size:
1712 1443 1436 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5127 5159 5127
Size: 32 5135
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5167
XbaI T'CTAG_A
Cuts at: 2503 2503
Size: 5167
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5167
XmaI C'CCGG_G
Cuts at: 1870 2492 1870
Size: 622 4545
XmnI GAAnn'nnTTC
Cuts at: 3296 3296
Size: 5167
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2975 276
Size: 53 83 186 936 1441 2468
Fragments arranged by size:
2468 1441 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI
EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PstI PvuI PvuII RsrII SacI SacII
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI
PmlI PpuMI PspOMI PspXI PsrI SanDI SapI SexAI
SfiI SfoI SrfI SwaI XcmI