Restriction map for
pFN21AE0202
(Circular) (Six-base) MAPSORT of: pFN21AE0202.seq Check: 7798 from: 1 to: 5509
pFN21AE0202 5509 bp
With 182 enzymes: SgfI *
October 20, 2009 10:45 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3319 278
Size: 53 83 186 936 1783 2468
Fragments arranged by size:
2468 1783 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2852 1937
Size: 915 4594
Acc65I G'GTAC_C
Cuts at: 2830 2830
Size: 5509
AclI AA'CG_TT
Cuts at: 1563 3636 4009 1563
Size: 2073 373 3063
Fragments arranged by size:
3063 2073 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2499 2802 3572 4956 5224 1632
Size: 867 303 770 1384 268 1917
Fragments arranged by size:
1917 1384 867 770 303 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5312
AflIII A'CryG_T
Cuts at: 1203 4408 5385 1203
Size: 3205 977 1327
Fragments arranged by size:
3205 1327 977
AgeI A'CCGG_T
Cuts at: 4340 4340
Size: 5509
AhdI GACnn_n'nnGTC
Cuts at: 4238 4238
Size: 5509
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5509
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5509
AlwNI CAG_nnn'CTG
Cuts at: 3252 4824 3252
Size: 1572 3937
ApaLI G'TGCA_C
Cuts at: 3566 4722 3566
Size: 1156 4353
ApoI r'AATT_y
Cuts at: 1493 2138 2344 2679 2818 3044 3196 5305 1493
Size: 645 206 335 139 226 152 2109 1697
Fragments arranged by size:
2109 1697 645 335 226 206 152 139
AseI AT'TA_AT
Cuts at: 160 1032 4063 160
Size: 872 3031 1606
Fragments arranged by size:
3031 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5509
AvaI C'yCGr_G
Cuts at: 1870 1943 2834 1870
Size: 73 891 4545
Fragments arranged by size:
4545 891 73
BamHI G'GATC_C
Cuts at: 2839 3206 2839
Size: 367 5142
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2830 4285 618
Size: 325 217 627 1043 1455 1842
Fragments arranged by size:
1842 1455 1043 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2828 1391
Size: 1437 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2744 2790 928
Size: 971 845 46 3647
Fragments arranged by size:
3647 971 845 46
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3700 3734 1903
Size: 34 1763 34 3678
Fragments arranged by size:
3678 1763 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3401 4611 3401
Size: 1210 4299
BclI T'GATC_A
Cuts at: 1548 2449 1548
Size: 901 4608
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4120 136
Size: 107 122 71 631 605 2448 1525
Fragments arranged by size:
2448 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2308 5504 2308
Size: 3196 2313
BlpI GC'TnA_GC
Cuts at: 2926 2926
Size: 5509
Bme1580I G_kGCm'C
Cuts at: 1790 3570 4726 1790
Size: 1780 1156 2573
Fragments arranged by size:
2573 1780 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5509
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3240 4198 442
Size: 416 53 83 399 24 1823 958 1753
Fragments arranged by size:
1823 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5509
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2051 2256 4169 1239
Size: 812 205 1913 2579
Fragments arranged by size:
2579 1913 812 205
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3634 4499 4797 3634
Size: 865 298 4346
Fragments arranged by size:
4346 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4172 882
Size: 617 2673 2219
Fragments arranged by size:
2673 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3300 493
Size: 711 2096 2702
Fragments arranged by size:
2702 2096 711
BsaBI GATnn'nnATC
Cuts at: 5503 5503
Size: 5509
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3316 3698 4333 275
Size: 53 83 186 936 1783 382 635 1451
Fragments arranged by size:
1783 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2545 3942 4340 4614 4761 5172 2545
Size: 1397 398 274 147 411 2882
Fragments arranged by size:
2882 1397 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5284
Fragments arranged by size:
5284 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2069 2498 2579 2582 2597 1186
Size: 883 429 81 3 15 4098
Fragments arranged by size:
4098 883 429 81 15 3
BseYI C'CCAG_C
Cuts at: 2186 4712 5208 2186
Size: 2526 496 2487
Fragments arranged by size:
2526 2487 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4936
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2959 3720 4748 1540
Size: 275 186 958 761 1028 2301
Fragments arranged by size:
2301 1028 958 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3570 3655 4726 3570
Size: 85 1071 4353
Fragments arranged by size:
4353 1071 85
BsmI GAATG_Cn'
Cuts at: 3020 3113 3020
Size: 93 5416
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2828 3570 3655 4726 1391
Size: 399 1038 742 85 1071 2174
Fragments arranged by size:
2174 1071 1038 742 399 85
BspEI T'CCGG_A
Cuts at: 5172 5172
Size: 5509
BspHI T'CATG_A
Cuts at: 3398 5128 3398
Size: 1730 3779
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2609 2864 844
Size: 1765 255 3489
Fragments arranged by size:
3489 1765 255
BsrBI CCG'CTC
Cuts at: 1394 1823 3396 1394
Size: 429 1573 3507
Fragments arranged by size:
3507 1573 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4004 4178 65
Size: 1183 2756 174 1396
Fragments arranged by size:
2756 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4153 4340 1700
Size: 110 2343 187 2869
Fragments arranged by size:
2869 2343 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5509
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5509
BssSI C'ACGA_G
Cuts at: 3569 4581 3569
Size: 1012 4497
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5509
BstBI TT'CG_AA
Cuts at: 2203 4313 2203
Size: 2110 3399
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5509
BstYI r'GATC_y
Cuts at: 1972 2045 2308 2839 3206 3591 3608 5060 5146
Size: 73 263 531 367 385 17 1452 86
Cuts at: 5146 5158 5504 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 531 385 367 346 263 86
73 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4018
Fragments arranged by size:
4018 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2517 487
Size: 683 56 1291 3479
Fragments arranged by size:
3479 1291 683 56
BtsI GCAGTG_nn'
Cuts at: 3025 3819 3839 3025
Size: 794 20 4695
Fragments arranged by size:
4695 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5509
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2272 2307 529
Size: 35 1708 35 3731
Fragments arranged by size:
3731 1708 35 35
DraI TTT'AAA
Cuts at: 2813 2813
Size: 5509
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4516 809
Size: 507 3200 1802
Fragments arranged by size:
3200 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2956 3845 5474
Size: 54 1425 50 275 18 1126 889 1629
Cuts at: 5474 8
Size: 43
Fragments arranged by size:
1629 1425 1126 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2956 1537
Size: 275 1144 4090
Fragments arranged by size:
4090 1144 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2475 2511 2517 2556 2568 2574 2637 2721
Size: 1122 36 6 39 12 6 63 84
Cuts at: 2721 2730 2759 3439 1353
Size: 9 29 680 3423
Fragments arranged by size:
3423 1122 680 84 63 39 36 29
12 9 6 6
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4096 4470 4616 387
Size: 1064 138 2507 374 146 1280
Fragments arranged by size:
2507 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2051 2256 2499 2802 3572 4169 4956
Size: 393 419 205 243 303 770 597 787
Cuts at: 4956 5224 1239
Size: 268 1524
Fragments arranged by size:
1524 787 770 597 419 393 303 268
243 205
EcoRI G'AATT_C
Cuts at: 2818 3196 2818
Size: 378 5131
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2768 2768
Size: 5509
FspI TGC'GCA
Cuts at: 4015 4015
Size: 5509
HaeII r_GCGC'y
Cuts at: 1678 2471 4656 1678
Size: 793 2185 2531
Fragments arranged by size:
2531 2185 793
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4150 4182 4224 4256 1373
Size: 32 135 32 2578 32 42 32 2626
Fragments arranged by size:
2626 2578 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2853 3099 669
Size: 988 281 915 246 3079
Fragments arranged by size:
3079 988 915 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5509
HpaI GTT'AAC
Cuts at: 3099 3099
Size: 5509
KpnI G_GTAC'C
Cuts at: 2834 2834
Size: 5509
MfeI C'AATT_G
Cuts at: 3108 3108
Size: 5509
MluI A'CGCG_T
Cuts at: 5385 5385
Size: 5509
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4623 4807 1305
Size: 3318 184 2007
Fragments arranged by size:
3318 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3687
Fragments arranged by size:
3687 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2009 3467 3826 3985 518
Size: 648 843 1458 359 159 2042
Fragments arranged by size:
2042 1458 843 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2925 3602 4750 4995 1606
Size: 1319 677 1148 245 2120
Fragments arranged by size:
2120 1319 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4018
Fragments arranged by size:
4018 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5509
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5509
NotI GC'GGCC_GC
Cuts at: 2956 2956
Size: 5509
NspI r_CATG'y
Cuts at: 1132 1229 2867 4412 1132
Size: 97 1638 1545 2229
Fragments arranged by size:
2229 1638 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5509
PciI A'CATG_T
Cuts at: 4408 4408
Size: 5509
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5509
PmeI GTTT'AAAC
Cuts at: 2813 2813
Size: 5509
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3578 3610 5091 5123 3578
Size: 32 1481 32 3964
Fragments arranged by size:
3964 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5509
PsiI TTA'TAA
Cuts at: 3079 3079
Size: 5509
PstI C_TGCA'G
Cuts at: 830 2424 2861 830
Size: 1594 437 3478
Fragments arranged by size:
3478 1594 437
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5509
SalI G'TCGA_C
Cuts at: 1936 2851 1936
Size: 915 4594
SbfI CC_TGCA'GG
Cuts at: 2861 2861
Size: 5509
ScaI AGT'ACT
Cuts at: 3757 5469 3757
Size: 1712 3797
SfcI C'TryA_G
Cuts at: 826 1045 2420 2857 3992 4673 4864 826
Size: 219 1375 437 1135 681 191 1471
Fragments arranged by size:
1471 1375 1135 681 437 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5509
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5509
SmaI CCC'GGG
Cuts at: 1872 2836 1872
Size: 964 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3613 4514 4776 820
Size: 197 926 1670 901 262 1553
Fragments arranged by size:
1670 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3300 493
Size: 2807 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5509
SphI G_CATG'C
Cuts at: 1132 2867 1132
Size: 1735 3774
SspI AAT'ATT
Cuts at: 5 52 3433 5
Size: 47 3381 2081
Fragments arranged by size:
3381 2081 47
StuI AGG'CCT
Cuts at: 1517 2112 1517
Size: 595 4914
StyI C'CwwG_G
Cuts at: 513 1065 2004 2948 513
Size: 552 939 944 3074
Fragments arranged by size:
3074 944 939 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3536 3553 3706 3891 4336 325
Size: 1255 1956 17 153 185 445 1498
Fragments arranged by size:
1956 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2315 3755 5467
Size: 274 80 33 51 1443 338 1440 1712
Cuts at: 5467 96
Size: 138
Fragments arranged by size:
1712 1443 1440 338 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5469 5501 5469
Size: 32 5477
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5509
XbaI T'CTAG_A
Cuts at: 2845 2845
Size: 5509
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5509
XmaI C'CCGG_G
Cuts at: 1870 2834 1870
Size: 964 4545
XmnI GAAnn'nnTTC
Cuts at: 2679 3638 2679
Size: 959 4550
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3317 276
Size: 53 83 186 936 1783 2468
Fragments arranged by size:
2468 1783 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI
FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI
PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI