Restriction map for
pFN21AE0141
(Circular) (Six-base) MAPSORT of: pFN21AE0141.seq Check: 1388 from: 1 to: 5377
pFN21AE0141 5377 bp
With 182 enzymes: SgfI *
October 20, 2009 10:44 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3187 278
Size: 53 83 186 936 1651 2468
Fragments arranged by size:
2468 1651 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2720 1937
Size: 783 4594
Acc65I G'GTAC_C
Cuts at: 2698 2698
Size: 5377
AclI AA'CG_TT
Cuts at: 1563 3504 3877 1563
Size: 1941 373 3063
Fragments arranged by size:
3063 1941 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2162 2462 3440 4824 5092 1632
Size: 530 300 978 1384 268 1917
Fragments arranged by size:
1917 1384 978 530 300 268
AfeI AGC'GCT
Cuts at: 2246 2246
Size: 5377
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5180
AflIII A'CryG_T
Cuts at: 1203 4276 5253 1203
Size: 3073 977 1327
Fragments arranged by size:
3073 1327 977
AgeI A'CCGG_T
Cuts at: 2596 4208 2596
Size: 1612 3765
AhdI GACnn_n'nnGTC
Cuts at: 4106 4106
Size: 5377
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5377
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5377
AlwNI CAG_nnn'CTG
Cuts at: 3120 4692 3120
Size: 1572 3805
ApaLI G'TGCA_C
Cuts at: 3434 4590 3434
Size: 1156 4221
ApoI r'AATT_y
Cuts at: 1493 2686 2912 3064 5173 1493
Size: 1193 226 152 2109 1697
Fragments arranged by size:
2109 1697 1193 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3931 160
Size: 872 2899 1606
Fragments arranged by size:
2899 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5377
AvaI C'yCGr_G
Cuts at: 1870 1943 2165 2261 2319 2702 1870
Size: 73 222 96 58 383 4545
Fragments arranged by size:
4545 383 222 96 73 58
BamHI G'GATC_C
Cuts at: 2707 3074 2707
Size: 367 5010
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2698 4153 618
Size: 325 217 627 911 1455 1842
Fragments arranged by size:
1842 1455 911 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2130 2174 2696 1391
Size: 739 44 522 4072
Fragments arranged by size:
4072 739 522 44
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4406
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3568 3602 1903
Size: 34 1631 34 3678
Fragments arranged by size:
3678 1631 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3269 4479 3269
Size: 1210 4167
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5377
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3988 136
Size: 107 122 71 631 605 2316 1525
Fragments arranged by size:
2316 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5372 5372
Size: 5377
BlpI GC'TnA_GC
Cuts at: 2794 2794
Size: 5377
Bme1580I G_kGCm'C
Cuts at: 1790 2412 3438 4594 1790
Size: 622 1026 1156 2573
Fragments arranged by size:
2573 1156 1026 622
BmgBI CAC'GTC
Cuts at: 1318 2095 2326 1318
Size: 777 231 4369
Fragments arranged by size:
4369 777 231
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2583 3108 4066
Size: 416 53 83 399 24 1166 525 958
Cuts at: 4066 442
Size: 1753
Fragments arranged by size:
1753 1166 958 525 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5377
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2509 2509
Size: 5377
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2240 4037 1239
Size: 1001 1797 2579
Fragments arranged by size:
2579 1797 1001
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2438 3502 4367 4665 2438
Size: 1064 865 298 3150
Fragments arranged by size:
3150 1064 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4040 882
Size: 617 2541 2219
Fragments arranged by size:
2541 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2284 3168 493
Size: 711 1080 884 2702
Fragments arranged by size:
2702 1080 884 711
BsaBI GATnn'nnATC
Cuts at: 5371 5371
Size: 5377
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2384 2579 3184 3566
Size: 53 83 186 936 851 195 605 382
Cuts at: 3566 4201 275
Size: 635 1451
Fragments arranged by size:
1451 936 851 635 605 382 195 186
83 53
BsaWI w'CCGG_w
Cuts at: 2596 3810 4208 4482 4629 5040 2596
Size: 1214 398 274 147 411 2933
Fragments arranged by size:
2933 1214 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5152
Fragments arranged by size:
5152 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5377
BseYI C'CCAG_C
Cuts at: 2224 4580 5076 2224
Size: 2356 496 2525
Fragments arranged by size:
2525 2356 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2192 2348 1163
Size: 573 456 156 4192
Fragments arranged by size:
4192 573 456 156
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2827 3588 4616 1540
Size: 275 186 826 761 1028 2301
Fragments arranged by size:
2301 1028 826 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3438 3523 4594 3438
Size: 85 1071 4221
Fragments arranged by size:
4221 1071 85
BsmI GAATG_Cn'
Cuts at: 2888 2981 2888
Size: 93 5284
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2130 2174 2412 2696 3438 3523 4594
Size: 399 340 44 238 284 742 85 1071
Cuts at: 4594 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 399 340 284 238 85
44
BspEI T'CCGG_A
Cuts at: 5040 5040
Size: 5377
BspHI T'CATG_A
Cuts at: 3266 4996 3266
Size: 1730 3647
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2214 2732 844
Size: 1370 518 3489
Fragments arranged by size:
3489 1370 518
BsrBI CCG'CTC
Cuts at: 1394 1823 3264 1394
Size: 429 1441 3507
Fragments arranged by size:
3507 1441 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3872 4046 65
Size: 1183 2624 174 1396
Fragments arranged by size:
2624 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2596 4021 4208 1700
Size: 110 786 1425 187 2869
Fragments arranged by size:
2869 1425 786 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5377
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5377
BssSI C'ACGA_G
Cuts at: 2213 3437 4449 2213
Size: 1224 1012 3141
Fragments arranged by size:
3141 1224 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2247 794
Size: 1453 3924
BstBI TT'CG_AA
Cuts at: 4181 4181
Size: 5377
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5377
BstYI r'GATC_y
Cuts at: 1972 2421 2707 3074 3459 3476 4928 5014 5026
Size: 449 286 367 385 17 1452 86 12
Cuts at: 5026 5372 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 449 385 367 346 286 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2151 2274 513
Size: 552 939 147 123 3616
Fragments arranged by size:
3616 939 552 147 123
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4638
Fragments arranged by size:
4638 683 56
BtsI GCAGTG_nn'
Cuts at: 2893 3687 3707 2893
Size: 794 20 4563
Fragments arranged by size:
4563 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5377
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5342
DraI TTT'AAA
Cuts at: 2656 2681 2656
Size: 25 5352
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4384 809
Size: 507 3068 1802
Fragments arranged by size:
3068 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2271 2824 3713
Size: 54 1425 50 275 18 441 553 889
Cuts at: 3713 5342 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 553 441 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2824 1537
Size: 275 1012 4090
Fragments arranged by size:
4090 1012 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2366 3307 1353
Size: 1013 941 3423
Fragments arranged by size:
3423 1013 941
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3964 4338 4484 387
Size: 1064 138 2375 374 146 1280
Fragments arranged by size:
2375 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2162 2240 2462 3440 4037 4824 5092
Size: 393 530 78 222 978 597 787 268
Cuts at: 5092 1239
Size: 1524
Fragments arranged by size:
1524 978 787 597 530 393 268 222
78
EcoRI G'AATT_C
Cuts at: 2686 3064 2686
Size: 378 4999
FspI TGC'GCA
Cuts at: 2108 3883 2108
Size: 1775 3602
HaeII r_GCGC'y
Cuts at: 1678 2248 4524 1678
Size: 570 2276 2531
Fragments arranged by size:
2531 2276 570
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2550 2582 4018 4050 4092
Size: 32 135 32 978 32 1436 32 42
Cuts at: 4092 4124 1373
Size: 32 2626
Fragments arranged by size:
2626 1436 978 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2461 2721 2967 669
Size: 988 281 523 260 246 3079
Fragments arranged by size:
3079 988 523 281 260 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5377
HpaI GTT'AAC
Cuts at: 2967 2967
Size: 5377
KpnI G_GTAC'C
Cuts at: 2702 2702
Size: 5377
MfeI C'AATT_G
Cuts at: 2976 2976
Size: 5377
MluI A'CGCG_T
Cuts at: 5253 5253
Size: 5377
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2572 4491 4675 1305
Size: 1267 1919 184 2007
Fragments arranged by size:
2007 1919 1267 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3555
Fragments arranged by size:
3555 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2183 3335 3694 3853 518
Size: 648 1017 1152 359 159 2042
Fragments arranged by size:
2042 1152 1017 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2793 3470 4618 4863 1606
Size: 1187 677 1148 245 2120
Fragments arranged by size:
2120 1187 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2274 513
Size: 552 939 270 3616
Fragments arranged by size:
3616 939 552 270
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5377
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5377
NotI GC'GGCC_GC
Cuts at: 2824 2824
Size: 5377
NspI r_CATG'y
Cuts at: 1132 1229 2735 4280 1132
Size: 97 1506 1545 2229
Fragments arranged by size:
2229 1545 1506 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5377
PciI A'CATG_T
Cuts at: 4276 4276
Size: 5377
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2218 1108
Size: 1110 4267
PmeI GTTT'AAAC
Cuts at: 2681 2681
Size: 5377
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3446 3478 4959 4991 3446
Size: 32 1481 32 3832
Fragments arranged by size:
3832 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5377
PsiI TTA'TAA
Cuts at: 2947 2947
Size: 5377
PstI C_TGCA'G
Cuts at: 830 2729 830
Size: 1899 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5377
SalI G'TCGA_C
Cuts at: 1936 2719 1936
Size: 783 4594
SapI GCTCTTCn'nnn_
Cuts at: 2366 2366
Size: 5377
SbfI CC_TGCA'GG
Cuts at: 2729 2729
Size: 5377
ScaI AGT'ACT
Cuts at: 3625 5337 3625
Size: 1712 3665
SfcI C'TryA_G
Cuts at: 826 1045 2725 3860 4541 4732 826
Size: 219 1680 1135 681 191 1471
Fragments arranged by size:
1680 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5377
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5377
SmaI CCC'GGG
Cuts at: 1872 2321 2704 1872
Size: 449 383 4545
Fragments arranged by size:
4545 449 383
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2453 3481 4382 4644 820
Size: 197 926 510 1028 901 262 1553
Fragments arranged by size:
1553 1028 926 901 510 262 197
SnaBI TAC'GTA
Cuts at: 493 3168 493
Size: 2675 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5377
SphI G_CATG'C
Cuts at: 1132 2735 1132
Size: 1603 3774
SspI AAT'ATT
Cuts at: 5 52 3301 5
Size: 47 3249 2081
Fragments arranged by size:
3249 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5377
StyI C'CwwG_G
Cuts at: 513 1065 2004 2274 2412 2547 2816 513
Size: 552 939 270 138 135 269 3074
Fragments arranged by size:
3074 939 552 270 269 138 135
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3404 3421 3574 3759 4204 325
Size: 1255 1824 17 153 185 445 1498
Fragments arranged by size:
1824 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3623 5335 96
Size: 274 80 33 51 1443 1646 1712 138
Fragments arranged by size:
1712 1646 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5337 5369 5337
Size: 32 5345
Tth111I GACn'n_nGTC
Cuts at: 1316 2093 1316
Size: 777 4600
XbaI T'CTAG_A
Cuts at: 2713 2713
Size: 5377
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2281 2011
Size: 270 5107
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5377
XmaI C'CCGG_G
Cuts at: 1870 2319 2702 1870
Size: 449 383 4545
Fragments arranged by size:
4545 449 383
XmnI GAAnn'nnTTC
Cuts at: 2375 3506 2375
Size: 1131 4246
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3185 276
Size: 53 83 186 936 1651 2468
Fragments arranged by size:
2468 1651 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PshAI PsiI PstI PvuI SalI SapI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SexAI SfiI SfoI SrfI SwaI