Restriction map for
pFN21AB9554
(Circular) (Six-base) MAPSORT of: pFN21AB9554.seq Check: 315 from: 1 to: 5215
pFN21AB9554 5215 bp
With 182 enzymes: SgfI *
February 27, 2009 14:44 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3025 278
Size: 53 83 186 936 1489 2468
Fragments arranged by size:
2468 1489 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2558 1937
Size: 621 4594
Acc65I G'GTAC_C
Cuts at: 2536 2536
Size: 5215
AclI AA'CG_TT
Cuts at: 1563 3342 3715 1563
Size: 1779 373 3063
Fragments arranged by size:
3063 1779 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3278 4662 4930 1632
Size: 1646 1384 268 1917
Fragments arranged by size:
1917 1646 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5018
AflIII A'CryG_T
Cuts at: 1203 2121 2232 4114 5091 1203
Size: 918 111 1882 977 1327
Fragments arranged by size:
1882 1327 977 918 111
AgeI A'CCGG_T
Cuts at: 4046 4046
Size: 5215
AhdI GACnn_n'nnGTC
Cuts at: 3944 3944
Size: 5215
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5215
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5215
AlwNI CAG_nnn'CTG
Cuts at: 2257 2449 2958 4530 2257
Size: 192 509 1572 2942
Fragments arranged by size:
2942 1572 509 192
ApaLI G'TGCA_C
Cuts at: 3272 4428 3272
Size: 1156 4059
ApoI r'AATT_y
Cuts at: 1493 2524 2750 2902 5011 1493
Size: 1031 226 152 2109 1697
Fragments arranged by size:
2109 1697 1031 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3769 160
Size: 872 2737 1606
Fragments arranged by size:
2737 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5215
AvaI C'yCGr_G
Cuts at: 1870 1943 2321 2540 1870
Size: 73 378 219 4545
Fragments arranged by size:
4545 378 219 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2008 2041 2008
Size: 33 5182
BamHI G'GATC_C
Cuts at: 2545 2912 2545
Size: 367 4848
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2467 2536 3991 618
Size: 325 217 627 680 69 1455 1842
Fragments arranged by size:
1842 1455 680 627 325 217 69
BanII G_rGCy'C
Cuts at: 1391 2319 2372 2534 1391
Size: 928 53 162 4072
Fragments arranged by size:
4072 928 162 53
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2404 928
Size: 971 505 3739
Fragments arranged by size:
3739 971 505
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3406 3440 1903
Size: 34 1469 34 3678
Fragments arranged by size:
3678 1469 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3107 4317 3107
Size: 1210 4005
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5215
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3826 136
Size: 107 122 71 631 605 2154 1525
Fragments arranged by size:
2154 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5210 5210
Size: 5215
BlpI GC'TnA_GC
Cuts at: 2258 2366 2371 2632 2258
Size: 108 5 261 4841
Fragments arranged by size:
4841 261 108 5
Bme1580I G_kGCm'C
Cuts at: 1790 2470 3276 4432 1790
Size: 680 806 1156 2573
Fragments arranged by size:
2573 1156 806 680
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5215
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2946 3904 442
Size: 416 53 83 399 24 1529 958 1753
Fragments arranged by size:
1753 1529 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5215
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2354 2366 3875 1239
Size: 1115 12 1509 2579
Fragments arranged by size:
2579 1509 1115 12
Bpu10I CC'TnA_GC
Cuts at: 2313 2313
Size: 5215
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2081 3340 4205 4503 2081
Size: 1259 865 298 2793
Fragments arranged by size:
2793 1259 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2238 3878 882
Size: 617 739 1640 2219
Fragments arranged by size:
2219 1640 739 617
BsaAI yAC'GTr
Cuts at: 493 1204 3006 493
Size: 711 1802 2702
Fragments arranged by size:
2702 1802 711
BsaBI GATnn'nnATC
Cuts at: 5209 5209
Size: 5215
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3022 3404 4039 275
Size: 53 83 186 936 1489 382 635 1451
Fragments arranged by size:
1489 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3648 4046 4320 4467 4878 3648
Size: 398 274 147 411 3985
Fragments arranged by size:
3985 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2195 2225 1178
Size: 30 165 30 792 30 4168
Fragments arranged by size:
4168 792 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2288 2291 1186
Size: 1102 3 4110
Fragments arranged by size:
4110 1102 3
BseYI C'CCAG_C
Cuts at: 4418 4914 4418
Size: 496 4719
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4642
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2038 2665 3426 4454 1540
Size: 275 186 37 627 761 1028 2301
Fragments arranged by size:
2301 1028 761 627 275 186 37
BsiHKAI G_wGCw'C
Cuts at: 2319 2372 3276 3361 4432 2319
Size: 53 904 85 1071 3102
Fragments arranged by size:
3102 1071 904 85 53
BsmI GAATG_Cn'
Cuts at: 2726 2819 2726
Size: 93 5122
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2319 2372 2470 2534 3276 3361 4432
Size: 399 529 53 98 64 742 85 1071
Cuts at: 4432 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 529 399 98 85 64
53
BspEI T'CCGG_A
Cuts at: 4878 4878
Size: 5215
BspHI T'CATG_A
Cuts at: 3104 4834 3104
Size: 1730 3485
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2256 2570 844
Size: 1412 314 3489
Fragments arranged by size:
3489 1412 314
BsrBI CCG'CTC
Cuts at: 1394 1823 2040 3102 1394
Size: 429 217 1062 3507
Fragments arranged by size:
3507 1062 429 217
BsrDI GCAATG_nn'
Cuts at: 65 1248 3710 3884 65
Size: 1183 2462 174 1396
Fragments arranged by size:
2462 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3859 4046 1700
Size: 110 2049 187 2869
Fragments arranged by size:
2869 2049 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5215
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5215
BssSI C'ACGA_G
Cuts at: 3275 4287 3275
Size: 1012 4203
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5215
BstBI TT'CG_AA
Cuts at: 4019 4019
Size: 5215
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5215
BstXI CCAn_nnnn'nTGG
Cuts at: 2149 2149
Size: 5215
BstYI r'GATC_y
Cuts at: 1972 2545 2912 3297 3314 4766 4852 4864 5210
Size: 573 367 385 17 1452 86 12 346
Cuts at: 5210 1972
Size: 1977
Fragments arranged by size:
1977 1452 573 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2424 513
Size: 552 939 420 3304
Fragments arranged by size:
3304 939 552 420
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4476
Fragments arranged by size:
4476 683 56
BtsI GCAGTG_nn'
Cuts at: 2731 3525 3545 2731
Size: 794 20 4401
Fragments arranged by size:
4401 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5215
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5180
DraI TTT'AAA
Cuts at: 2519 2519
Size: 5215
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4222 809
Size: 507 2906 1802
Fragments arranged by size:
2906 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2432 2662 3551
Size: 54 1425 50 275 18 602 230 889
Cuts at: 3551 5180 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 602 275 230 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2662 1537
Size: 275 850 4090
Fragments arranged by size:
4090 850 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2345 3145 1353
Size: 992 800 3423
Fragments arranged by size:
3423 992 800
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3802 4176 4322 387
Size: 1064 138 2213 374 146 1280
Fragments arranged by size:
2213 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2317 2370 2317
Size: 53 5162
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2354 2366 3278 3875 4662 4930 1239
Size: 393 722 12 912 597 787 268 1524
Fragments arranged by size:
1524 912 787 722 597 393 268 12
EcoRI G'AATT_C
Cuts at: 2524 2902 2524
Size: 378 4837
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2035 2035
Size: 5215
FspI TGC'GCA
Cuts at: 3721 3721
Size: 5215
HaeII r_GCGC'y
Cuts at: 1678 4362 1678
Size: 2684 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2195 2227 3856 3888 3930
Size: 32 135 32 623 32 1629 32 42
Cuts at: 3930 3962 1373
Size: 32 2626
Fragments arranged by size:
2626 1629 623 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2559 2805 669
Size: 988 281 621 246 3079
Fragments arranged by size:
3079 988 621 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5215
HpaI GTT'AAC
Cuts at: 2805 2805
Size: 5215
KpnI G_GTAC'C
Cuts at: 2540 2540
Size: 5215
MfeI C'AATT_G
Cuts at: 2814 2814
Size: 5215
MluI A'CGCG_T
Cuts at: 5091 5091
Size: 5215
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2238 4329 4513 1305
Size: 933 2091 184 2007
Fragments arranged by size:
2091 2007 933 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2434 10
Size: 54 1425 343 602 2791
Fragments arranged by size:
2791 1425 602 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2267 3173 3532 3691 518
Size: 648 1101 906 359 159 2042
Fragments arranged by size:
2042 1101 906 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2138 2631 3308 4456 4701 1606
Size: 532 493 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 532 493 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3724
Fragments arranged by size:
3724 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5215
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5215
NotI GC'GGCC_GC
Cuts at: 2662 2662
Size: 5215
NspI r_CATG'y
Cuts at: 1132 1229 2125 2236 2573 4118 1132
Size: 97 896 111 337 1545 2229
Fragments arranged by size:
2229 1545 896 337 111 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5215
PciI A'CATG_T
Cuts at: 2121 2232 4114 2121
Size: 111 1882 3222
Fragments arranged by size:
3222 1882 111
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2295 1108
Size: 1187 4028
PfoI T'CCnGG_A
Cuts at: 2046 2046
Size: 5215
PmeI GTTT'AAAC
Cuts at: 2519 2519
Size: 5215
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3284 3316 4797 4829 3284
Size: 32 1481 32 3670
Fragments arranged by size:
3670 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5215
PsiI TTA'TAA
Cuts at: 2785 2785
Size: 5215
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2108 2140 2108
Size: 32 5183
PstI C_TGCA'G
Cuts at: 830 2091 2177 2222 2253 2496 2567 830
Size: 1261 86 45 31 243 71 3478
Fragments arranged by size:
3478 1261 243 86 71 45 31
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5215
PvuII CAG'CTG
Cuts at: 2138 2138
Size: 5215
SacI G_AGCT'C
Cuts at: 2319 2372 2319
Size: 53 5162
SalI G'TCGA_C
Cuts at: 1936 2557 1936
Size: 621 4594
SbfI CC_TGCA'GG
Cuts at: 2177 2253 2567 2177
Size: 76 314 4825
Fragments arranged by size:
4825 314 76
ScaI AGT'ACT
Cuts at: 3463 5175 3463
Size: 1712 3503
SfcI C'TryA_G
Cuts at: 826 1045 2087 2173 2218 2249 2492 2563 3698
Size: 219 1042 86 45 31 243 71 1135
Cuts at: 3698 4379 4570 826
Size: 681 191 1471
Fragments arranged by size:
1471 1135 1042 681 243 219 191 86
71 45 31
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5215
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5215
SmaI CCC'GGG
Cuts at: 1872 2542 1872
Size: 670 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2096 3319 4220 4482 820
Size: 197 926 153 1223 901 262 1553
Fragments arranged by size:
1553 1223 926 901 262 197 153
SnaBI TAC'GTA
Cuts at: 493 3006 493
Size: 2513 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5215
SphI G_CATG'C
Cuts at: 1132 2573 1132
Size: 1441 3774
SspI AAT'ATT
Cuts at: 5 52 3139 5
Size: 47 3087 2081
Fragments arranged by size:
3087 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5215
StyI C'CwwG_G
Cuts at: 513 1065 2004 2654 513
Size: 552 939 650 3074
Fragments arranged by size:
3074 939 650 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3242 3259 3412 3597 4042 325
Size: 1255 1662 17 153 185 445 1498
Fragments arranged by size:
1662 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3461 5173 96
Size: 274 80 33 51 1443 1484 1712 138
Fragments arranged by size:
1712 1484 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5175 5207 5175
Size: 32 5183
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5215
XbaI T'CTAG_A
Cuts at: 2551 2551
Size: 5215
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2204 2481 2204
Size: 277 4938
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5215
XmaI C'CCGG_G
Cuts at: 1870 2540 1870
Size: 670 4545
XmnI GAAnn'nnTTC
Cuts at: 3344 3344
Size: 5215
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3023 276
Size: 53 83 186 936 1489 2468
Fragments arranged by size:
2468 1489 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PfoI PmeI PpiI PshAI PsiI PsrI
PstI PvuI PvuII SacI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XcmI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BbeI BbvCI
BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoNI
EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PmlI PpuMI PspOMI PspXI RsrII
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI