Restriction map for
pFN21AB8748
(Circular) (Six-base) MAPSORT of: pFN21AB8748.seq Check: 9454 from: 1 to: 5212
pFN21AB8748 5212 bp
With 182 enzymes: SgfI *
April 15, 2010 09:30 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2053 2053
Size: 5212
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3022 278
Size: 53 83 186 936 1486 2468
Fragments arranged by size:
2468 1486 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2555 1937
Size: 618 4594
Acc65I G'GTAC_C
Cuts at: 2449 2533 2449
Size: 84 5128
AclI AA'CG_TT
Cuts at: 1563 3339 3712 1563
Size: 1776 373 3063
Fragments arranged by size:
3063 1776 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3275 4659 4927 1632
Size: 1643 1384 268 1917
Fragments arranged by size:
1917 1643 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5015
AflIII A'CryG_T
Cuts at: 1203 4111 5088 1203
Size: 2908 977 1327
Fragments arranged by size:
2908 1327 977
AgeI A'CCGG_T
Cuts at: 4043 4043
Size: 5212
AhdI GACnn_n'nnGTC
Cuts at: 3941 3941
Size: 5212
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5212
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5212
AlwNI CAG_nnn'CTG
Cuts at: 2955 4527 2955
Size: 1572 3640
ApaLI G'TGCA_C
Cuts at: 3269 4425 3269
Size: 1156 4056
ApoI r'AATT_y
Cuts at: 1493 2521 2747 2899 5008 1493
Size: 1028 226 152 2109 1697
Fragments arranged by size:
2109 1697 1028 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3766 160
Size: 872 2734 1606
Fragments arranged by size:
2734 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5212
AvaI C'yCGr_G
Cuts at: 1870 1943 2537 1870
Size: 73 594 4545
Fragments arranged by size:
4545 594 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2433 2466 2433
Size: 33 5179
BamHI G'GATC_C
Cuts at: 2542 2909 2542
Size: 367 4845
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2390 2449 2533 3988 618
Size: 325 217 627 603 59 84 1455 1842
Fragments arranged by size:
1842 1455 627 603 325 217 84 59
BanII G_rGCy'C
Cuts at: 1391 2531 1391
Size: 1140 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2504 928
Size: 971 605 3636
Fragments arranged by size:
3636 971 605
BbvCI CC'TCA_GC
Cuts at: 2046 2046
Size: 5212
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3403 3437 1903
Size: 34 1466 34 3678
Fragments arranged by size:
3678 1466 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2408 3104 4314 2408
Size: 696 1210 3306
Fragments arranged by size:
3306 1210 696
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5212
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3823 136
Size: 107 122 71 631 605 2151 1525
Fragments arranged by size:
2151 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5207 5207
Size: 5212
BlpI GC'TnA_GC
Cuts at: 2490 2629 2490
Size: 139 5073
Bme1580I G_kGCm'C
Cuts at: 1790 3273 4429 1790
Size: 1483 1156 2573
Fragments arranged by size:
2573 1483 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5212
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2943 3901 442
Size: 416 53 83 399 24 1526 958 1753
Fragments arranged by size:
1753 1526 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5212
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2463 3872 1239
Size: 1224 1409 2579
Fragments arranged by size:
2579 1409 1224
Bpu10I CC'TnA_GC
Cuts at: 2046 2190 2214 2238 2262 2286 2310 2382 2406
Size: 144 24 24 24 24 24 72 24
Cuts at: 2406 2046
Size: 4852
Fragments arranged by size:
4852 144 72 24 24 24 24 24
24
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3337 4202 4500 3337
Size: 865 298 4049
Fragments arranged by size:
4049 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3875 882
Size: 617 2376 2219
Fragments arranged by size:
2376 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3003 493
Size: 711 1799 2702
Fragments arranged by size:
2702 1799 711
BsaBI GATnn'nnATC
Cuts at: 5206 5206
Size: 5212
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3019 3401 4036 275
Size: 53 83 186 936 1486 382 635 1451
Fragments arranged by size:
1486 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3645 4043 4317 4464 4875 3645
Size: 398 274 147 411 3982
Fragments arranged by size:
3982 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2461 2491 1178
Size: 30 165 30 1058 30 3899
Fragments arranged by size:
3899 1058 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5212
BseYI C'CCAG_C
Cuts at: 2075 2485 4415 4911 2075
Size: 410 1930 496 2376
Fragments arranged by size:
2376 1930 496 410
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4639
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2662 3423 4451 1540
Size: 275 186 661 761 1028 2301
Fragments arranged by size:
2301 1028 761 661 275 186
BsiHKAI G_wGCw'C
Cuts at: 3273 3358 4429 3273
Size: 85 1071 4056
Fragments arranged by size:
4056 1071 85
BsmI GAATG_Cn'
Cuts at: 2723 2816 2723
Size: 93 5119
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2531 3273 3358 4429 1391
Size: 399 741 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 741 399 85
BspEI T'CCGG_A
Cuts at: 4875 4875
Size: 5212
BspHI T'CATG_A
Cuts at: 3101 4831 3101
Size: 1730 3482
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2053 2567 844
Size: 1209 514 3489
Fragments arranged by size:
3489 1209 514
BsrBI CCG'CTC
Cuts at: 1394 1823 3099 1394
Size: 429 1276 3507
Fragments arranged by size:
3507 1276 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3707 3881 65
Size: 1183 2459 174 1396
Fragments arranged by size:
2459 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3856 4043 1700
Size: 110 2046 187 2869
Fragments arranged by size:
2869 2046 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5212
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5212
BssSI C'ACGA_G
Cuts at: 3272 4284 3272
Size: 1012 4200
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5212
BstBI TT'CG_AA
Cuts at: 4016 4016
Size: 5212
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5212
BstYI r'GATC_y
Cuts at: 1972 2542 2909 3294 3311 4763 4849 4861 5207
Size: 570 367 385 17 1452 86 12 346
Cuts at: 5207 1972
Size: 1977
Fragments arranged by size:
1977 1452 570 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2091 2091
Size: 5212
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4660
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4473
Fragments arranged by size:
4473 683 56
BtsI GCAGTG_nn'
Cuts at: 2728 3522 3542 2728
Size: 794 20 4398
Fragments arranged by size:
4398 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5212
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5177
DraI TTT'AAA
Cuts at: 2516 2516
Size: 5212
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4219 809
Size: 507 2903 1802
Fragments arranged by size:
2903 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2659 3548 5177
Size: 54 1425 50 275 18 829 889 1629
Cuts at: 5177 8
Size: 43
Fragments arranged by size:
1629 1425 889 829 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2659 1537
Size: 275 847 4090
Fragments arranged by size:
4090 847 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3142 1353
Size: 1789 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3799 4173 4319 387
Size: 1064 138 2210 374 146 1280
Fragments arranged by size:
2210 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2463 3275 3872 4659 4927 1239
Size: 393 831 812 597 787 268 1524
Fragments arranged by size:
1524 831 812 787 597 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2193 2217 2241 2265 2289 2313 2337 2361 2385
Size: 24 24 24 24 24 24 24 24
Cuts at: 2385 2409 2433 2193
Size: 24 24 4972
Fragments arranged by size:
4972 24 24 24 24 24 24 24
24 24 24
EcoO109I rG'GnC_Cy
Cuts at: 2185 2209 2233 2257 2281 2305 2329 2353 2185
Size: 24 24 24 24 24 24 24 5044
Fragments arranged by size:
5044 24 24 24 24 24 24 24
EcoRI G'AATT_C
Cuts at: 2521 2899 2521
Size: 378 4834
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2047 2047
Size: 5212
FspI TGC'GCA
Cuts at: 3718 3718
Size: 5212
HaeII r_GCGC'y
Cuts at: 1678 4359 1678
Size: 2681 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3853 3885 3927 3959 1373
Size: 32 135 32 2281 32 42 32 2626
Fragments arranged by size:
2626 2281 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2556 2802 669
Size: 988 281 618 246 3079
Fragments arranged by size:
3079 988 618 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5212
HpaI GTT'AAC
Cuts at: 2802 2802
Size: 5212
KpnI G_GTAC'C
Cuts at: 2453 2537 2453
Size: 84 5128
MfeI C'AATT_G
Cuts at: 2811 2811
Size: 5212
MluI A'CGCG_T
Cuts at: 5088 5088
Size: 5212
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4326 4510 1305
Size: 3021 184 2007
Fragments arranged by size:
3021 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3390
Fragments arranged by size:
3390 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3170 3529 3688 518
Size: 648 2004 359 159 2042
Fragments arranged by size:
2042 2004 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2628 3305 4453 4698 1606
Size: 1022 677 1148 245 2120
Fragments arranged by size:
2120 1148 1022 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4660
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5212
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5212
NotI GC'GGCC_GC
Cuts at: 2659 2659
Size: 5212
NspI r_CATG'y
Cuts at: 1132 1229 2570 4115 1132
Size: 97 1341 1545 2229
Fragments arranged by size:
2229 1545 1341 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5212
PciI A'CATG_T
Cuts at: 4111 4111
Size: 5212
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2147 1108
Size: 1039 4173
PmeI GTTT'AAAC
Cuts at: 2516 2516
Size: 5212
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3281 3313 4794 4826 3281
Size: 32 1481 32 3667
Fragments arranged by size:
3667 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2185 2209 2233 2257 2281 2305 2329 2353 2185
Size: 24 24 24 24 24 24 24 5044
Fragments arranged by size:
5044 24 24 24 24 24 24 24
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5212
PsiI TTA'TAA
Cuts at: 2782 2782
Size: 5212
PstI C_TGCA'G
Cuts at: 830 2564 830
Size: 1734 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5212
SalI G'TCGA_C
Cuts at: 1936 2554 1936
Size: 618 4594
SbfI CC_TGCA'GG
Cuts at: 2564 2564
Size: 5212
ScaI AGT'ACT
Cuts at: 3460 5172 3460
Size: 1712 3500
SfcI C'TryA_G
Cuts at: 826 1045 2560 3695 4376 4567 826
Size: 219 1515 1135 681 191 1471
Fragments arranged by size:
1515 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5212
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5212
SmaI CCC'GGG
Cuts at: 1872 2539 1872
Size: 667 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3316 4217 4479 820
Size: 197 926 1373 901 262 1553
Fragments arranged by size:
1553 1373 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3003 493
Size: 2510 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5212
SphI G_CATG'C
Cuts at: 1132 2570 1132
Size: 1438 3774
SspI AAT'ATT
Cuts at: 5 52 2100 3136 5
Size: 47 2048 1036 2081
Fragments arranged by size:
2081 2048 1036 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5212
StyI C'CwwG_G
Cuts at: 513 1065 2115 2181 2205 2229 2253 2277 2301
Size: 552 1050 66 24 24 24 24 24
Cuts at: 2301 2325 2362 2651 513
Size: 24 37 289 3074
Fragments arranged by size:
3074 1050 552 289 66 37 24 24
24 24 24 24
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3239 3256 3409 3594 4039 325
Size: 1255 1659 17 153 185 445 1498
Fragments arranged by size:
1659 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3458 5170 96
Size: 274 80 33 51 1443 1481 1712 138
Fragments arranged by size:
1712 1481 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2146 2178 2410 2442 5172 5204 2146
Size: 32 232 32 2730 32 2154
Fragments arranged by size:
2730 2154 232 32 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5212
XbaI T'CTAG_A
Cuts at: 2548 2548
Size: 5212
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5212
XmaI C'CCGG_G
Cuts at: 1870 2537 1870
Size: 667 4545
XmnI GAAnn'nnTTC
Cuts at: 3341 3341
Size: 5212
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3020 276
Size: 53 83 186 936 1486 2468
Fragments arranged by size:
2468 1486 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BaeI BamHI BanI BanII BbsI BbvCI
BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI
BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI
FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI
MluI MmeI MscI MslI MspA1I NcoI NdeI NheI
NotI NspI PasI PciI PflMI PmeI PpiI PpuMI
PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BbeI BfrBI BplI
BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV FseI
FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI
PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI