Restriction map for
pFN21AB8280
(Circular) (Six-base) MAPSORT of: pFN21AB8280.seq Check: 3493 from: 1 to: 5275
pFN21AB8280 5275 bp
With 182 enzymes: SgfI *
February 27, 2009 14:41 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2446 3085 278
Size: 53 83 186 936 910 639 2468
Fragments arranged by size:
2468 936 910 639 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2618 1937
Size: 681 4594
Acc65I G'GTAC_C
Cuts at: 2556 2596 2556
Size: 40 5235
AclI AA'CG_TT
Cuts at: 1563 3402 3775 1563
Size: 1839 373 3063
Fragments arranged by size:
3063 1839 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2525 3338 4722 4990 1632
Size: 893 813 1384 268 1917
Fragments arranged by size:
1917 1384 893 813 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5078
AflIII A'CryG_T
Cuts at: 1203 4174 5151 1203
Size: 2971 977 1327
Fragments arranged by size:
2971 1327 977
AgeI A'CCGG_T
Cuts at: 4106 4106
Size: 5275
AhdI GACnn_n'nnGTC
Cuts at: 4004 4004
Size: 5275
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5275
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5275
AlwNI CAG_nnn'CTG
Cuts at: 2390 3018 4590 2390
Size: 628 1572 3075
Fragments arranged by size:
3075 1572 628
ApaLI G'TGCA_C
Cuts at: 3332 4488 3332
Size: 1156 4119
ApoI r'AATT_y
Cuts at: 1493 2038 2584 2810 2962 5071 1493
Size: 545 546 226 152 2109 1697
Fragments arranged by size:
2109 1697 546 545 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3829 160
Size: 872 2797 1606
Fragments arranged by size:
2797 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
AvaI C'yCGr_G
Cuts at: 1870 1943 2064 2084 2600 1870
Size: 73 121 20 516 4545
Fragments arranged by size:
4545 516 121 73 20
BamHI G'GATC_C
Cuts at: 2605 2972 2605
Size: 367 4908
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2556 2596 4051 618
Size: 325 217 627 769 40 1455 1842
Fragments arranged by size:
1842 1455 769 627 325 217 40
BanII G_rGCy'C
Cuts at: 1391 2594 1391
Size: 1203 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2233 2467 928
Size: 971 334 234 3736
Fragments arranged by size:
3736 971 334 234
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3466 3500 1903
Size: 34 1529 34 3678
Fragments arranged by size:
3678 1529 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2411 3167 4377 2411
Size: 756 1210 3309
Fragments arranged by size:
3309 1210 756
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5275
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3886 136
Size: 107 122 71 631 605 2214 1525
Fragments arranged by size:
2214 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2088 5270 2088
Size: 3182 2093
BlpI GC'TnA_GC
Cuts at: 2692 2692
Size: 5275
Bme1580I G_kGCm'C
Cuts at: 1790 3336 4492 1790
Size: 1546 1156 2573
Fragments arranged by size:
2573 1546 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5275
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3006 3964 442
Size: 416 53 83 399 24 1589 958 1753
Fragments arranged by size:
1753 1589 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5275
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2151 3935 1239
Size: 912 1784 2579
Fragments arranged by size:
2579 1784 912
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3400 4265 4563 3400
Size: 865 298 4112
Fragments arranged by size:
4112 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3938 882
Size: 617 2439 2219
Fragments arranged by size:
2439 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3066 493
Size: 711 1862 2702
Fragments arranged by size:
2702 1862 711
BsaBI GATnn'nnATC
Cuts at: 5269 5269
Size: 5275
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2443 3082 3464 4099
Size: 53 83 186 936 910 639 382 635
Cuts at: 4099 275
Size: 1451
Fragments arranged by size:
1451 936 910 639 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3708 4106 4380 4527 4938 3708
Size: 398 274 147 411 4045
Fragments arranged by size:
4045 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2323 2353 1178
Size: 30 165 30 920 30 4100
Fragments arranged by size:
4100 920 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2312 1186
Size: 1126 4149
BseYI C'CCAG_C
Cuts at: 4478 4974 4478
Size: 496 4779
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2453 1163
Size: 573 717 3985
Fragments arranged by size:
3985 717 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2725 3486 4514 1540
Size: 275 186 724 761 1028 2301
Fragments arranged by size:
2301 1028 761 724 275 186
BsiHKAI G_wGCw'C
Cuts at: 3336 3421 4492 3336
Size: 85 1071 4119
Fragments arranged by size:
4119 1071 85
BsmI GAATG_Cn'
Cuts at: 2245 2468 2515 2786 2879 2245
Size: 223 47 271 93 4641
Fragments arranged by size:
4641 271 223 93 47
BsmBI CGTCTCn'nnnn_
Cuts at: 2310 2450 2310
Size: 140 5135
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2594 3336 3421 4492 1391
Size: 399 804 742 85 1071 2174
Fragments arranged by size:
2174 1071 804 742 399 85
BspEI T'CCGG_A
Cuts at: 4938 4938
Size: 5275
BspHI T'CATG_A
Cuts at: 3164 4894 3164
Size: 1730 3545
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2630 844
Size: 1786 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3162 1394
Size: 429 1339 3507
Fragments arranged by size:
3507 1339 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3770 3944 65
Size: 1183 2522 174 1396
Fragments arranged by size:
2522 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3919 4106 1700
Size: 110 2109 187 2869
Fragments arranged by size:
2869 2109 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5275
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5275
BssSI C'ACGA_G
Cuts at: 2117 3335 4347 2117
Size: 1218 1012 3045
Fragments arranged by size:
3045 1218 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5275
BstBI TT'CG_AA
Cuts at: 4079 4079
Size: 5275
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5275
BstXI CCAn_nnnn'nTGG
Cuts at: 2410 2410
Size: 5275
BstYI r'GATC_y
Cuts at: 1972 2088 2605 2972 3357 3374 4826 4912 4924
Size: 116 517 367 385 17 1452 86 12
Cuts at: 4924 5270 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 517 385 367 346 116 86
17 12
Bsu36I CC'TnA_GG
Cuts at: 2375 2383 2375
Size: 8 5267
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4723
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4536
Fragments arranged by size:
4536 683 56
BtsI GCAGTG_nn'
Cuts at: 2293 2791 3585 3605 2293
Size: 498 794 20 3963
Fragments arranged by size:
3963 794 498 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5275
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5240
DraI TTT'AAA
Cuts at: 2579 2579
Size: 5275
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4282 809
Size: 507 2966 1802
Fragments arranged by size:
2966 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2467 2722 3611
Size: 54 1425 50 275 18 637 255 889
Cuts at: 3611 5240 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 637 275 255 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2722 1537
Size: 275 910 4090
Fragments arranged by size:
4090 910 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3205 1353
Size: 1852 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3862 4236 4382 387
Size: 1064 138 2273 374 146 1280
Fragments arranged by size:
2273 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2151 2525 3338 3935 4722 4990 1239
Size: 393 519 374 813 597 787 268 1524
Fragments arranged by size:
1524 813 787 597 519 393 374 268
EcoO109I rG'GnC_Cy
Cuts at: 2379 2379
Size: 5275
EcoRI G'AATT_C
Cuts at: 2584 2962 2584
Size: 378 4897
FspI TGC'GCA
Cuts at: 3781 3781
Size: 5275
HaeII r_GCGC'y
Cuts at: 1678 2367 4422 1678
Size: 689 2055 2531
Fragments arranged by size:
2531 2055 689
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2288 2320 2405 2433 2437
Size: 32 135 32 716 32 85 28 4
Cuts at: 2437 2465 3916 3948 3990 4022 1373
Size: 28 1451 32 42 32 2626
Fragments arranged by size:
2626 1451 716 135 85 42 32 32
32 32 32 28 28 4
HincII GTy'rAC
Cuts at: 669 1657 1938 2215 2619 2865 669
Size: 988 281 277 404 246 3079
Fragments arranged by size:
3079 988 404 281 277 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5275
HpaI GTT'AAC
Cuts at: 2865 2865
Size: 5275
KpnI G_GTAC'C
Cuts at: 2560 2600 2560
Size: 40 5235
MfeI C'AATT_G
Cuts at: 2874 2874
Size: 5275
MluI A'CGCG_T
Cuts at: 5151 5151
Size: 5275
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4389 4573 1305
Size: 3084 184 2007
Fragments arranged by size:
3084 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3453
Fragments arranged by size:
3453 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2408 3233 3592 3751 518
Size: 648 1242 825 359 159 2042
Fragments arranged by size:
2042 1242 825 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2274 2691 3368 4516 4761 1606
Size: 668 417 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 668 417 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4723
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5275
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5275
NotI GC'GGCC_GC
Cuts at: 2722 2722
Size: 5275
NspI r_CATG'y
Cuts at: 1132 1229 2633 4178 1132
Size: 97 1404 1545 2229
Fragments arranged by size:
2229 1545 1404 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5275
PciI A'CATG_T
Cuts at: 4174 4174
Size: 5275
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5275
PmeI GTTT'AAAC
Cuts at: 2579 2579
Size: 5275
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3344 3376 4857 4889 3344
Size: 32 1481 32 3730
Fragments arranged by size:
3730 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5275
PsiI TTA'TAA
Cuts at: 2845 2845
Size: 5275
PstI C_TGCA'G
Cuts at: 830 2627 830
Size: 1797 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5275
PvuII CAG'CTG
Cuts at: 2274 2274
Size: 5275
SalI G'TCGA_C
Cuts at: 1936 2617 1936
Size: 681 4594
SbfI CC_TGCA'GG
Cuts at: 2627 2627
Size: 5275
ScaI AGT'ACT
Cuts at: 3523 5235 3523
Size: 1712 3563
SfcI C'TryA_G
Cuts at: 826 1045 2367 2479 2623 3758 4439 4630 826
Size: 219 1322 112 144 1135 681 191 1471
Fragments arranged by size:
1471 1322 1135 681 219 191 144 112
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5275
SmaI CCC'GGG
Cuts at: 1872 2602 1872
Size: 730 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3379 4280 4542 820
Size: 197 926 1436 901 262 1553
Fragments arranged by size:
1553 1436 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3066 493
Size: 2573 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5275
SphI G_CATG'C
Cuts at: 1132 2633 1132
Size: 1501 3774
SspI AAT'ATT
Cuts at: 5 52 3199 5
Size: 47 3147 2081
Fragments arranged by size:
3147 2081 47
StuI AGG'CCT
Cuts at: 1517 2373 1517
Size: 856 4419
StyI C'CwwG_G
Cuts at: 513 1065 2094 2231 2714 513
Size: 552 1029 137 483 3074
Fragments arranged by size:
3074 1029 552 483 137
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3302 3319 3472 3657 4102 325
Size: 1255 1722 17 153 185 445 1498
Fragments arranged by size:
1722 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2009 3521 5233
Size: 274 80 33 51 1443 32 1512 1712
Cuts at: 5233 96
Size: 138
Fragments arranged by size:
1712 1512 1443 274 138 80 51 33
32
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5235 5267 5235
Size: 32 5243
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5275
XbaI T'CTAG_A
Cuts at: 2042 2611 2042
Size: 569 4706
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2116 2116
Size: 5275
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5275
XmaI C'CCGG_G
Cuts at: 1870 2600 1870
Size: 730 4545
XmnI GAAnn'nnTTC
Cuts at: 3404 3404
Size: 5275
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2444 3083 276
Size: 53 83 186 936 910 639 2468
Fragments arranged by size:
2468 936 910 639 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BstZ17I DraIII EcoICRI
EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI RsrII SacI SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI