Restriction map for
pFN21AB8273
(Circular) (Six-base) MAPSORT of: pFN21AB8273.seq Check: 7705 from: 1 to: 5536
pFN21AB8273 5536 bp
With 182 enzymes: SgfI *
February 27, 2009 14:41 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3346 278
Size: 53 83 186 936 1810 2468
Fragments arranged by size:
2468 1810 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2879 1937
Size: 942 4594
Acc65I G'GTAC_C
Cuts at: 2857 2857
Size: 5536
AclI AA'CG_TT
Cuts at: 1563 3663 4036 1563
Size: 2100 373 3063
Fragments arranged by size:
3063 2100 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2217 2402 3599 4983 5251 1632
Size: 585 185 1197 1384 268 1917
Fragments arranged by size:
1917 1384 1197 585 268 185
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5339
AflIII A'CryG_T
Cuts at: 1203 4435 5412 1203
Size: 3232 977 1327
Fragments arranged by size:
3232 1327 977
AgeI A'CCGG_T
Cuts at: 4367 4367
Size: 5536
AhdI GACnn_n'nnGTC
Cuts at: 4265 4265
Size: 5536
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5536
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5536
AlwNI CAG_nnn'CTG
Cuts at: 3279 4851 3279
Size: 1572 3964
ApaLI G'TGCA_C
Cuts at: 3593 4749 3593
Size: 1156 4380
ApoI r'AATT_y
Cuts at: 1493 2845 3071 3223 5332 1493
Size: 1352 226 152 2109 1697
Fragments arranged by size:
2109 1697 1352 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4090 160
Size: 872 3058 1606
Fragments arranged by size:
3058 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5536
AvaI C'yCGr_G
Cuts at: 1870 1943 2861 1870
Size: 73 918 4545
Fragments arranged by size:
4545 918 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2728 2761 2728
Size: 33 5503
BamHI G'GATC_C
Cuts at: 2866 3233 2866
Size: 367 5169
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2857 4312 618
Size: 325 217 627 1070 1455 1842
Fragments arranged by size:
1842 1455 1070 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2328 2639 2855 1391
Size: 937 311 216 4072
Fragments arranged by size:
4072 937 311 216
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2342 928
Size: 971 443 4122
Fragments arranged by size:
4122 971 443
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2122 2156 3727 3761 1903
Size: 34 185 34 1571 34 3678
Fragments arranged by size:
3678 1571 185 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2096 3428 4638 2096
Size: 1332 1210 2994
Fragments arranged by size:
2994 1332 1210
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5536
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2009 4147 136
Size: 107 122 71 631 605 337 2138 1525
Fragments arranged by size:
2138 1525 631 605 337 122 107 71
BglII A'GATC_T
Cuts at: 5531 5531
Size: 5536
BlpI GC'TnA_GC
Cuts at: 2953 2953
Size: 5536
Bme1580I G_kGCm'C
Cuts at: 1790 2709 3597 4753 1790
Size: 919 888 1156 2573
Fragments arranged by size:
2573 1156 919 888
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5536
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3267 4225 442
Size: 416 53 83 399 24 1850 958 1753
Fragments arranged by size:
1850 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5536
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2347 2347
Size: 5536
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2342 2810 4196 1239
Size: 1103 468 1386 2579
Fragments arranged by size:
2579 1386 1103 468
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3661 4526 4824 3661
Size: 865 298 4373
Fragments arranged by size:
4373 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4199 882
Size: 617 2700 2219
Fragments arranged by size:
2700 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3327 493
Size: 711 2123 2702
Fragments arranged by size:
2702 2123 711
BsaBI GATnn'nnATC
Cuts at: 5530 5530
Size: 5536
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3343 3725 4360 275
Size: 53 83 186 936 1810 382 635 1451
Fragments arranged by size:
1810 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2121 2639 3969 4367 4641 4788 5199 2121
Size: 518 1330 398 274 147 411 2458
Fragments arranged by size:
2458 1330 518 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2321 2351 2430 2460 2621
Size: 30 165 30 918 30 79 30 161
Cuts at: 2621 2651 1178
Size: 30 4063
Fragments arranged by size:
4063 918 165 161 79 30 30 30
30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2588 2591 2775 1186
Size: 1402 3 184 3947
Fragments arranged by size:
3947 1402 184 3
BseYI C'CCAG_C
Cuts at: 2144 2270 2301 4739 5235 2144
Size: 126 31 2438 496 2445
Fragments arranged by size:
2445 2438 496 126 31
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2439 1163
Size: 573 703 4260
Fragments arranged by size:
4260 703 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2986 3747 4775 1540
Size: 275 186 985 761 1028 2301
Fragments arranged by size:
2301 1028 985 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2328 3597 3682 4753 2328
Size: 1269 85 1071 3111
Fragments arranged by size:
3111 1269 1071 85
BsmI GAATG_Cn'
Cuts at: 2074 3047 3140 2074
Size: 973 93 4470
Fragments arranged by size:
4470 973 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2328 2639 2709 2855 3597 3682 4753
Size: 399 538 311 70 146 742 85 1071
Cuts at: 4753 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 538 399 311 146 85
70
BspEI T'CCGG_A
Cuts at: 2121 2639 5199 2121
Size: 518 2560 2458
Fragments arranged by size:
2560 2458 518
BspHI T'CATG_A
Cuts at: 3425 5155 3425
Size: 1730 3806
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2891 844
Size: 2047 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3423 1394
Size: 429 1600 3507
Fragments arranged by size:
3507 1600 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2541 4031 4205 65
Size: 1183 1293 1490 174 1396
Fragments arranged by size:
1490 1396 1293 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2733 4180 4367 1700
Size: 110 923 1447 187 2869
Fragments arranged by size:
2869 1447 923 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5536
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5536
BssSI C'ACGA_G
Cuts at: 3596 4608 3596
Size: 1012 4524
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5536
BstBI TT'CG_AA
Cuts at: 4340 4340
Size: 5536
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5536
BstXI CCAn_nnnn'nTGG
Cuts at: 2593 2593
Size: 5536
BstYI r'GATC_y
Cuts at: 1972 2866 3233 3618 3635 5087 5173 5185 5531
Size: 894 367 385 17 1452 86 12 346
Cuts at: 5531 1972
Size: 1977
Fragments arranged by size:
1977 1452 894 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2511 513
Size: 552 939 507 3538
Fragments arranged by size:
3538 939 552 507
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2125 2593 487
Size: 683 56 899 468 3430
Fragments arranged by size:
3430 899 683 468 56
BtsI GCAGTG_nn'
Cuts at: 3052 3846 3866 3052
Size: 794 20 4722
Fragments arranged by size:
4722 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5536
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5501
DraI TTT'AAA
Cuts at: 2840 2840
Size: 5536
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2660 4543 809
Size: 507 1344 1883 1802
Fragments arranged by size:
1883 1802 1344 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2344 2731 2983
Size: 54 1425 50 275 18 514 387 252
Cuts at: 2983 3872 5501 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 514 387 275 252 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2983 1537
Size: 275 1171 4090
Fragments arranged by size:
4090 1171 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3466 1353
Size: 2113 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2681 4123 4497 4643 387
Size: 1064 138 1092 1442 374 146 1280
Fragments arranged by size:
1442 1280 1092 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2326 2326
Size: 5536
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2217 2342 2402 2810 3599 4196 4983
Size: 393 585 125 60 408 789 597 787
Cuts at: 4983 5251 1239
Size: 268 1524
Fragments arranged by size:
1524 789 787 597 585 408 393 268
125 60
EcoRI G'AATT_C
Cuts at: 2845 3223 2845
Size: 378 5158
FspI TGC'GCA
Cuts at: 4042 4042
Size: 5536
HaeII r_GCGC'y
Cuts at: 1678 4683 1678
Size: 3005 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2356 2388 2445 2477 2621
Size: 32 135 32 784 32 57 32 144
Cuts at: 2621 2653 4177 4209 4251 4283 1373
Size: 32 1524 32 42 32 2626
Fragments arranged by size:
2626 1524 784 144 135 57 42 32
32 32 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2880 3126 669
Size: 988 281 942 246 3079
Fragments arranged by size:
3079 988 942 281 246
HindIII A'AGCT_T
Cuts at: 748 2108 748
Size: 1360 4176
HpaI GTT'AAC
Cuts at: 3126 3126
Size: 5536
KpnI G_GTAC'C
Cuts at: 2861 2861
Size: 5536
MfeI C'AATT_G
Cuts at: 3135 3135
Size: 5536
MluI A'CGCG_T
Cuts at: 5412 5412
Size: 5536
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2017 2340 4650 4834 1305
Size: 712 323 2310 184 2007
Fragments arranged by size:
2310 2007 712 323 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3714
Fragments arranged by size:
3714 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2291 3494 3853 4012 518
Size: 648 1125 1203 359 159 2042
Fragments arranged by size:
2042 1203 1125 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2279 2615 2952 3629 4777 5022 1606
Size: 673 336 337 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 673 337 336 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2511 513
Size: 552 939 507 3538
Fragments arranged by size:
3538 939 552 507
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5536
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5536
NotI GC'GGCC_GC
Cuts at: 2983 2983
Size: 5536
NspI r_CATG'y
Cuts at: 1132 1229 2894 4439 1132
Size: 97 1665 1545 2229
Fragments arranged by size:
2229 1665 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5536
PciI A'CATG_T
Cuts at: 4435 4435
Size: 5536
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2036 2824 1108
Size: 928 788 3820
Fragments arranged by size:
3820 928 788
PmeI GTTT'AAAC
Cuts at: 2840 2840
Size: 5536
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3605 3637 5118 5150 3605
Size: 32 1481 32 3991
Fragments arranged by size:
3991 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5536
PsiI TTA'TAA
Cuts at: 3106 3106
Size: 5536
PstI C_TGCA'G
Cuts at: 830 2284 2764 2888 830
Size: 1454 480 124 3478
Fragments arranged by size:
3478 1454 480 124
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5536
PvuII CAG'CTG
Cuts at: 2279 2615 2279
Size: 336 5200
SacI G_AGCT'C
Cuts at: 2328 2328
Size: 5536
SalI G'TCGA_C
Cuts at: 1936 2878 1936
Size: 942 4594
SbfI CC_TGCA'GG
Cuts at: 2888 2888
Size: 5536
ScaI AGT'ACT
Cuts at: 3784 5496 3784
Size: 1712 3824
SfcI C'TryA_G
Cuts at: 826 1045 2280 2464 2760 2884 4019 4700 4891
Size: 219 1235 184 296 124 1135 681 191
Cuts at: 4891 826
Size: 1471
Fragments arranged by size:
1471 1235 1135 681 296 219 191 184
124
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5536
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5536
SmaI CCC'GGG
Cuts at: 1872 2863 1872
Size: 991 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3640 4541 4803 820
Size: 197 926 1697 901 262 1553
Fragments arranged by size:
1697 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3327 493
Size: 2834 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5536
SphI G_CATG'C
Cuts at: 1132 2894 1132
Size: 1762 3774
SspI AAT'ATT
Cuts at: 5 52 2254 3460 5
Size: 47 2202 1206 2081
Fragments arranged by size:
2202 2081 1206 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5536
StyI C'CwwG_G
Cuts at: 513 1065 2004 2511 2526 2975 513
Size: 552 939 507 15 449 3074
Fragments arranged by size:
3074 939 552 507 449 15
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3563 3580 3733 3918 4363 325
Size: 1255 1983 17 153 185 445 1498
Fragments arranged by size:
1983 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3782 5494 96
Size: 274 80 33 51 1443 1805 1712 138
Fragments arranged by size:
1805 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2321 2353 5496 5528 2321
Size: 32 3143 32 2329
Fragments arranged by size:
3143 2329 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5536
XbaI T'CTAG_A
Cuts at: 2872 2872
Size: 5536
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2146 2146
Size: 5536
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5536
XmaI C'CCGG_G
Cuts at: 1870 2861 1870
Size: 991 4545
XmnI GAAnn'nnTTC
Cuts at: 3665 3665
Size: 5536
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3344 276
Size: 53 83 186 936 1810 2468
Fragments arranged by size:
2468 1810 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII
SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BbeI BbvCI
BfrBI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoNI
EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI
SfoI SrfI SwaI