(Circular) (Six-base) MAPSORT of: pFN21AB7415.seq Check: 3300 from: 1 to: 5668 pFN21AB7415 5668 bp With 182 enzymes: SgfI * January 16, 2009 15:26 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3478 278 Size: 53 83 186 936 1942 2468 Fragments arranged by size: 2468 1942 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3011 1937 Size: 1074 4594 Acc65I G'GTAC_C Cuts at: 2989 2989 Size: 5668 AclI AA'CG_TT Cuts at: 1563 3795 4168 1563 Size: 2232 373 3063 Fragments arranged by size: 3063 2232 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2107 3731 5115 5383 1632 Size: 475 1624 1384 268 1917 Fragments arranged by size: 1917 1624 1384 475 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5471 AflIII A'CryG_T Cuts at: 1203 4567 5544 1203 Size: 3364 977 1327 Fragments arranged by size: 3364 1327 977 AgeI A'CCGG_T Cuts at: 4499 4499 Size: 5668 AhdI GACnn_n'nnGTC Cuts at: 4397 4397 Size: 5668 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5668 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5668 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2408 2440 2408 Size: 32 5636 AlwNI CAG_nnn'CTG Cuts at: 2174 3411 4983 2174 Size: 1237 1572 2859 Fragments arranged by size: 2859 1572 1237 ApaLI G'TGCA_C Cuts at: 3725 4881 3725 Size: 1156 4512 ApoI r'AATT_y Cuts at: 1493 2182 2251 2277 2298 2977 3203 3355 5464 Size: 689 69 26 21 679 226 152 2109 Cuts at: 5464 1493 Size: 1697 Fragments arranged by size: 2109 1697 689 679 226 152 69 26 21 AseI AT'TA_AT Cuts at: 160 1032 4222 160 Size: 872 3190 1606 Fragments arranged by size: 3190 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5668 AvaI C'yCGr_G Cuts at: 1870 1943 2669 2993 1870 Size: 73 726 324 4545 Fragments arranged by size: 4545 726 324 73 BamHI G'GATC_C Cuts at: 2998 3365 2998 Size: 367 5301 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2989 4444 618 Size: 325 217 627 1202 1455 1842 Fragments arranged by size: 1842 1455 1202 627 325 217 BanII G_rGCy'C Cuts at: 1391 2821 2987 1391 Size: 1430 166 4072 Fragments arranged by size: 4072 1430 166 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2575 928 Size: 971 676 4021 Fragments arranged by size: 4021 971 676 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3859 3893 1903 Size: 34 1922 34 3678 Fragments arranged by size: 3678 1922 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3560 4770 3560 Size: 1210 4458 BclI T'GATC_A Cuts at: 1548 1548 Size: 5668 BfrBI ATG'CAT Cuts at: 2393 2393 Size: 5668 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4279 136 Size: 107 122 71 631 605 2607 1525 Fragments arranged by size: 2607 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5663 5663 Size: 5668 BlpI GC'TnA_GC Cuts at: 3085 3085 Size: 5668 Bme1580I G_kGCm'C Cuts at: 1790 2519 2616 3729 4885 1790 Size: 729 97 1113 1156 2573 Fragments arranged by size: 2573 1156 1113 729 97 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5668 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3399 4357 442 Size: 416 53 83 399 24 1982 958 1753 Fragments arranged by size: 1982 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2766 1056 Size: 1710 3958 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2133 4328 1239 Size: 894 2195 2579 Fragments arranged by size: 2579 2195 894 Bpu10I CC'TnA_GC Cuts at: 2160 2160 Size: 5668 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2399 3793 4658 4956 2399 Size: 1394 865 298 3111 Fragments arranged by size: 3111 1394 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2115 2310 4331 882 Size: 617 616 195 2021 2219 Fragments arranged by size: 2219 2021 617 616 195 BsaAI yAC'GTr Cuts at: 493 1204 3459 493 Size: 711 2255 2702 Fragments arranged by size: 2702 2255 711 BsaBI GATnn'nnATC Cuts at: 5662 5662 Size: 5668 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3475 3857 4492 275 Size: 53 83 186 936 1942 382 635 1451 Fragments arranged by size: 1942 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4101 4499 4773 4920 5331 4101 Size: 398 274 147 411 4438 Fragments arranged by size: 4438 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2408 2438 1178 Size: 30 165 30 1005 30 4408 Fragments arranged by size: 4408 1005 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2396 1186 Size: 1210 4458 BseYI C'CCAG_C Cuts at: 2518 4871 5367 2518 Size: 2353 496 2819 Fragments arranged by size: 2819 2353 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5095 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3118 3879 4907 1540 Size: 275 186 1117 761 1028 2301 Fragments arranged by size: 2301 1117 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2821 3729 3814 4885 2821 Size: 908 85 1071 3604 Fragments arranged by size: 3604 1071 908 85 BsmI GAATG_Cn' Cuts at: 2393 3179 3272 2393 Size: 786 93 4789 Fragments arranged by size: 4789 786 93 BsmBI CGTCTCn'nnnn_ Cuts at: 2019 2019 Size: 5668 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2519 2616 2821 2987 3729 3814 4885 Size: 399 729 97 205 166 742 85 1071 Cuts at: 4885 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 729 399 205 166 97 85 BspEI T'CCGG_A Cuts at: 5331 5331 Size: 5668 BspHI T'CATG_A Cuts at: 2113 3557 5287 2113 Size: 1444 1730 2494 Fragments arranged by size: 2494 1730 1444 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3023 844 Size: 2179 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3555 1394 Size: 429 1732 3507 Fragments arranged by size: 3507 1732 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4163 4337 65 Size: 1183 2915 174 1396 Fragments arranged by size: 2915 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4312 4499 1700 Size: 110 2502 187 2869 Fragments arranged by size: 2869 2502 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5668 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5668 BssSI C'ACGA_G Cuts at: 3728 4740 3728 Size: 1012 4656 BstAPI GCAn_nnn'nTGC Cuts at: 794 2638 794 Size: 1844 3824 BstBI TT'CG_AA Cuts at: 2296 4472 2296 Size: 2176 3492 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5668 BstXI CCAn_nnnn'nTGG Cuts at: 2447 2649 2447 Size: 202 5466 BstYI r'GATC_y Cuts at: 1972 2998 3365 3750 3767 5219 5305 5317 5663 Size: 1026 367 385 17 1452 86 12 346 Cuts at: 5663 1972 Size: 1977 Fragments arranged by size: 1977 1452 1026 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4177 Fragments arranged by size: 4177 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4929 Fragments arranged by size: 4929 683 56 BtsI GCAGTG_nn' Cuts at: 2843 2883 3184 3978 3998 2843 Size: 40 301 794 20 4513 Fragments arranged by size: 4513 794 301 40 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5668 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5633 DraI TTT'AAA Cuts at: 2547 2972 2547 Size: 425 5243 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4675 809 Size: 507 3359 1802 Fragments arranged by size: 3359 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2208 2260 3115 Size: 54 1425 50 275 18 378 52 855 Cuts at: 3115 4004 5633 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 855 378 275 54 52 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3115 1537 Size: 275 1303 4090 Fragments arranged by size: 4090 1303 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2826 3598 1353 Size: 1473 772 3423 Fragments arranged by size: 3423 1473 772 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4255 4629 4775 387 Size: 1064 138 2666 374 146 1280 Fragments arranged by size: 2666 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2819 2819 Size: 5668 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2107 2133 3731 4328 5115 5383 1239 Size: 393 475 26 1598 597 787 268 1524 Fragments arranged by size: 1598 1524 787 597 475 393 268 26 EcoO109I rG'GnC_Cy Cuts at: 2156 2156 Size: 5668 EcoRI G'AATT_C Cuts at: 2277 2977 3355 2277 Size: 700 378 4590 Fragments arranged by size: 4590 700 378 FspI TGC'GCA Cuts at: 4174 4174 Size: 5668 HaeII r_GCGC'y Cuts at: 1678 4815 1678 Size: 3137 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2041 2073 2129 2161 2790 Size: 32 135 32 469 32 56 32 629 Cuts at: 2790 2822 4309 4341 4383 4415 1373 Size: 32 1487 32 42 32 2626 Fragments arranged by size: 2626 1487 629 469 135 56 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3012 3258 669 Size: 988 281 1074 246 3079 Fragments arranged by size: 3079 1074 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5668 HpaI GTT'AAC Cuts at: 3258 3258 Size: 5668 KpnI G_GTAC'C Cuts at: 2993 2993 Size: 5668 MfeI C'AATT_G Cuts at: 3267 3267 Size: 5668 MluI A'CGCG_T Cuts at: 5544 5544 Size: 5668 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4782 4966 1305 Size: 3477 184 2007 Fragments arranged by size: 3477 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2210 2262 10 Size: 54 1425 343 378 52 3416 Fragments arranged by size: 3416 1425 378 343 54 52 MslI CAynn'nnrTG Cuts at: 518 1166 2445 3626 3985 4144 518 Size: 648 1279 1181 359 159 2042 Fragments arranged by size: 2042 1279 1181 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3084 3761 4909 5154 1606 Size: 1478 677 1148 245 2120 Fragments arranged by size: 2120 1478 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4177 Fragments arranged by size: 4177 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5668 NheI G'CTAG_C Cuts at: 1052 2762 1052 Size: 1710 3958 NotI GC'GGCC_GC Cuts at: 3115 3115 Size: 5668 NsiI A_TGCA'T Cuts at: 2395 2395 Size: 5668 NspI r_CATG'y Cuts at: 1132 1229 2074 3026 4571 1132 Size: 97 845 952 1545 2229 Fragments arranged by size: 2229 1545 952 845 97 PasI CC'CwG_GG Cuts at: 1348 2649 1348 Size: 1301 4367 PciI A'CATG_T Cuts at: 4567 4567 Size: 5668 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5668 PmeI GTTT'AAAC Cuts at: 2972 2972 Size: 5668 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2408 2440 3737 3769 5250 5282 2408 Size: 32 1297 32 1481 32 2794 Fragments arranged by size: 2794 1481 1297 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2156 2156 Size: 5668 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5668 PsiI TTA'TAA Cuts at: 3238 3238 Size: 5668 PstI C_TGCA'G Cuts at: 830 3020 830 Size: 2190 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5668 SacI G_AGCT'C Cuts at: 2821 2821 Size: 5668 SalI G'TCGA_C Cuts at: 1936 3010 1936 Size: 1074 4594 SapI GCTCTTCn'nnn_ Cuts at: 2826 2826 Size: 5668 SbfI CC_TGCA'GG Cuts at: 3020 3020 Size: 5668 ScaI AGT'ACT Cuts at: 3916 5628 3916 Size: 1712 3956 SfcI C'TryA_G Cuts at: 826 1045 3016 4151 4832 5023 826 Size: 219 1971 1135 681 191 1471 Fragments arranged by size: 1971 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5668 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5668 SmaI CCC'GGG Cuts at: 1872 2995 1872 Size: 1123 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2378 3772 4673 4935 820 Size: 197 926 435 1394 901 262 1553 Fragments arranged by size: 1553 1394 926 901 435 262 197 SnaBI TAC'GTA Cuts at: 493 3459 493 Size: 2966 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5668 SphI G_CATG'C Cuts at: 1132 2074 3026 1132 Size: 942 952 3774 Fragments arranged by size: 3774 952 942 SspI AAT'ATT Cuts at: 5 52 2878 3592 5 Size: 47 2826 714 2081 Fragments arranged by size: 2826 2081 714 47 StuI AGG'CCT Cuts at: 1517 2376 1517 Size: 859 4809 StyI C'CwwG_G Cuts at: 513 1065 2004 3107 513 Size: 552 939 1103 3074 Fragments arranged by size: 3074 1103 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3695 3712 3865 4050 4495 325 Size: 1255 2115 17 153 185 445 1498 Fragments arranged by size: 2115 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3914 5626 96 Size: 274 80 33 51 1443 1937 1712 138 Fragments arranged by size: 1937 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5628 5660 5628 Size: 32 5636 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5668 XbaI T'CTAG_A Cuts at: 3004 3004 Size: 5668 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2270 2270 Size: 5668 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5668 XmaI C'CCGG_G Cuts at: 1870 2993 1870 Size: 1123 4545 XmnI GAAnn'nnTTC Cuts at: 3797 3797 Size: 5668 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3476 276 Size: 53 83 186 936 1942 2468 Fragments arranged by size: 2468 1942 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SacI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BplI BsiWI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacII SanDI SexAI SfiI SfoI SrfI SwaI