Restriction map for
pFN21AB7409
(Circular) (Six-base) MAPSORT of: pFN21AB7409.seq Check: 18 from: 1 to: 5275
pFN21AB7409 5275 bp
With 182 enzymes: SgfI *
January 16, 2009 15:26 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3085 278
Size: 53 83 186 936 1549 2468
Fragments arranged by size:
2468 1549 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2351 2618 1937
Size: 414 267 4594
Fragments arranged by size:
4594 414 267
Acc65I G'GTAC_C
Cuts at: 2596 2596
Size: 5275
AclI AA'CG_TT
Cuts at: 1563 3402 3775 1563
Size: 1839 373 3063
Fragments arranged by size:
3063 1839 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2394 3338 4722 4990 1632
Size: 762 944 1384 268 1917
Fragments arranged by size:
1917 1384 944 762 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5078
AflIII A'CryG_T
Cuts at: 1203 4174 5151 1203
Size: 2971 977 1327
Fragments arranged by size:
2971 1327 977
AgeI A'CCGG_T
Cuts at: 4106 4106
Size: 5275
AhdI GACnn_n'nnGTC
Cuts at: 2347 4004 2347
Size: 1657 3618
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5275
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5275
AlwNI CAG_nnn'CTG
Cuts at: 3018 4590 3018
Size: 1572 3703
ApaLI G'TGCA_C
Cuts at: 3332 4488 3332
Size: 1156 4119
ApoI r'AATT_y
Cuts at: 1493 2584 2810 2962 5071 1493
Size: 1091 226 152 2109 1697
Fragments arranged by size:
2109 1697 1091 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3829 160
Size: 872 2797 1606
Fragments arranged by size:
2797 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
AvaI C'yCGr_G
Cuts at: 1870 1943 2063 2600 1870
Size: 73 120 537 4545
Fragments arranged by size:
4545 537 120 73
AvrII C'CTAG_G
Cuts at: 2183 2183
Size: 5275
BamHI G'GATC_C
Cuts at: 2130 2605 2972 2130
Size: 475 367 4433
Fragments arranged by size:
4433 475 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2596 4051 618
Size: 325 217 627 809 1455 1842
Fragments arranged by size:
1842 1455 809 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2013 2032 2111 2594 1391
Size: 622 19 79 483 4072
Fragments arranged by size:
4072 622 483 79 19
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4304
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3466 3500 1903
Size: 34 1529 34 3678
Fragments arranged by size:
3678 1529 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3167 4377 3167
Size: 1210 4065
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5275
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2036 3886 136
Size: 107 122 71 631 605 364 1850 1525
Fragments arranged by size:
1850 1525 631 605 364 122 107 71
BglII A'GATC_T
Cuts at: 5270 5270
Size: 5275
BlpI GC'TnA_GC
Cuts at: 2151 2692 2151
Size: 541 4734
Bme1580I G_kGCm'C
Cuts at: 1790 3336 4492 1790
Size: 1546 1156 2573
Fragments arranged by size:
2573 1546 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5275
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2309 2521 3006
Size: 416 53 83 399 24 892 212 485
Cuts at: 3006 3964 442
Size: 958 1753
Fragments arranged by size:
1753 958 892 485 416 399 212 83
53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5275
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2098 2163 3935 1239
Size: 859 65 1772 2579
Fragments arranged by size:
2579 1772 859 65
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2517 2530 3400 4265 4563 2517
Size: 13 870 865 298 3229
Fragments arranged by size:
3229 870 865 298 13
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2457 3938 882
Size: 617 958 1481 2219
Fragments arranged by size:
2219 1481 958 617
BsaAI yAC'GTr
Cuts at: 493 1204 3066 493
Size: 711 1862 2702
Fragments arranged by size:
2702 1862 711
BsaBI GATnn'nnATC
Cuts at: 5269 5269
Size: 5275
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3082 3464 4099 275
Size: 53 83 186 936 1549 382 635 1451
Fragments arranged by size:
1549 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3708 4106 4380 4527 4938 3708
Size: 398 274 147 411 4045
Fragments arranged by size:
4045 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5050
Fragments arranged by size:
5050 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2533 2554 1186
Size: 1347 21 3907
Fragments arranged by size:
3907 1347 21
BseYI C'CCAG_C
Cuts at: 4478 4974 4478
Size: 496 4779
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4702
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2025 2725 3486 4514 1540
Size: 275 186 24 700 761 1028 2301
Fragments arranged by size:
2301 1028 761 700 275 186 24
BsiHKAI G_wGCw'C
Cuts at: 2564 3336 3421 4492 2564
Size: 772 85 1071 3347
Fragments arranged by size:
3347 1071 772 85
BsmI GAATG_Cn'
Cuts at: 2786 2879 2786
Size: 93 5182
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2013 2032 2111 2564 2594 3336 3421
Size: 399 223 19 79 453 30 742 85
Cuts at: 3421 4492 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 453 399 223 85 79
30 19
BspEI T'CCGG_A
Cuts at: 4938 4938
Size: 5275
BspHI T'CATG_A
Cuts at: 3164 4894 3164
Size: 1730 3545
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2286 2630 844
Size: 1442 344 3489
Fragments arranged by size:
3489 1442 344
BsrBI CCG'CTC
Cuts at: 1394 1823 2527 3162 1394
Size: 429 704 635 3507
Fragments arranged by size:
3507 704 635 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3770 3944 65
Size: 1183 2522 174 1396
Fragments arranged by size:
2522 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3919 4106 1700
Size: 110 2109 187 2869
Fragments arranged by size:
2869 2109 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5275
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5275
BssSI C'ACGA_G
Cuts at: 3335 4347 3335
Size: 1012 4263
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5275
BstBI TT'CG_AA
Cuts at: 4079 4079
Size: 5275
BstEII G'GTnAC_C
Cuts at: 1184 2504 1184
Size: 1320 3955
BstXI CCAn_nnnn'nTGG
Cuts at: 2141 2141
Size: 5275
BstYI r'GATC_y
Cuts at: 1972 2130 2605 2972 3357 3374 4826 4912 4924
Size: 158 475 367 385 17 1452 86 12
Cuts at: 4924 5270 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 475 385 367 346 158 86
17 12
Bsu36I CC'TnA_GG
Cuts at: 2494 2494
Size: 5275
BtgI C'CryG_G
Cuts at: 513 1065 2004 2117 513
Size: 552 939 113 3671
Fragments arranged by size:
3671 939 552 113
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4536
Fragments arranged by size:
4536 683 56
BtsI GCAGTG_nn'
Cuts at: 2056 2791 3585 3605 2056
Size: 735 794 20 3726
Fragments arranged by size:
3726 794 735 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5275
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5240
DraI TTT'AAA
Cuts at: 2579 2579
Size: 5275
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4282 809
Size: 507 2966 1802
Fragments arranged by size:
2966 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2022 2304 2722
Size: 54 1425 50 275 18 192 282 418
Cuts at: 2722 3611 5240 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 418 282 275 192 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2022 2722 1537
Size: 275 210 700 4090
Fragments arranged by size:
4090 700 275 210
EarI CTCTTCn'nnn_
Cuts at: 1353 2370 3205 1353
Size: 1017 835 3423
Fragments arranged by size:
3423 1017 835
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2076 3862 4236 4382 387
Size: 1064 138 487 1786 374 146 1280
Fragments arranged by size:
1786 1280 1064 487 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2098 2163 2394 3338 3935 4722 4990
Size: 393 466 65 231 944 597 787 268
Cuts at: 4990 1239
Size: 1524
Fragments arranged by size:
1524 944 787 597 466 393 268 231
65
EcoO109I rG'GnC_Cy
Cuts at: 2390 2390
Size: 5275
EcoRI G'AATT_C
Cuts at: 2584 2962 2584
Size: 378 4897
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2236 2236
Size: 5275
FspI TGC'GCA
Cuts at: 3781 3781
Size: 5275
HaeII r_GCGC'y
Cuts at: 1678 4422 1678
Size: 2744 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2115 2147 2333 2365 3916
Size: 32 135 32 543 32 186 32 1551
Cuts at: 3916 3948 3990 4022 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1551 543 186 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2619 2865 669
Size: 988 281 681 246 3079
Fragments arranged by size:
3079 988 681 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5275
HpaI GTT'AAC
Cuts at: 2865 2865
Size: 5275
KpnI G_GTAC'C
Cuts at: 2600 2600
Size: 5275
MfeI C'AATT_G
Cuts at: 2874 2874
Size: 5275
MluI A'CGCG_T
Cuts at: 5151 5151
Size: 5275
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4389 4573 1305
Size: 3084 184 2007
Fragments arranged by size:
3084 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2306 10
Size: 54 1425 343 474 2979
Fragments arranged by size:
2979 1425 474 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3233 3592 3751 518
Size: 648 2067 359 159 2042
Fragments arranged by size:
2067 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2691 3368 4516 4761 1606
Size: 1085 677 1148 245 2120
Fragments arranged by size:
2120 1148 1085 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3784
Fragments arranged by size:
3784 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5275
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5275
NotI GC'GGCC_GC
Cuts at: 2722 2722
Size: 5275
NspI r_CATG'y
Cuts at: 1132 1229 2633 4178 1132
Size: 97 1404 1545 2229
Fragments arranged by size:
2229 1545 1404 97
PasI CC'CwG_GG
Cuts at: 1348 2447 1348
Size: 1099 4176
PciI A'CATG_T
Cuts at: 4174 4174
Size: 5275
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2422 1108
Size: 1314 3961
PmeI GTTT'AAAC
Cuts at: 2579 2579
Size: 5275
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3344 3376 4857 4889 3344
Size: 32 1481 32 3730
Fragments arranged by size:
3730 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2390 2390
Size: 5275
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5275
PsiI TTA'TAA
Cuts at: 2845 2845
Size: 5275
PstI C_TGCA'G
Cuts at: 830 2627 830
Size: 1797 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5275
SalI G'TCGA_C
Cuts at: 1936 2617 1936
Size: 681 4594
SapI GCTCTTCn'nnn_
Cuts at: 2370 2370
Size: 5275
SbfI CC_TGCA'GG
Cuts at: 2627 2627
Size: 5275
ScaI AGT'ACT
Cuts at: 2301 3523 5235 2301
Size: 1222 1712 2341
Fragments arranged by size:
2341 1712 1222
SfcI C'TryA_G
Cuts at: 826 1045 2623 3758 4439 4630 826
Size: 219 1578 1135 681 191 1471
Fragments arranged by size:
1578 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5275
SmaI CCC'GGG
Cuts at: 1872 2065 2602 1872
Size: 193 537 4545
Fragments arranged by size:
4545 537 193
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2532 2545 3379 4280 4542 820
Size: 197 926 589 13 834 901 262 1553
Fragments arranged by size:
1553 926 901 834 589 262 197 13
SnaBI TAC'GTA
Cuts at: 493 3066 493
Size: 2573 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5275
SphI G_CATG'C
Cuts at: 1132 2633 1132
Size: 1501 3774
SspI AAT'ATT
Cuts at: 5 52 3199 5
Size: 47 3147 2081
Fragments arranged by size:
3147 2081 47
StuI AGG'CCT
Cuts at: 1517 2083 1517
Size: 566 4709
StyI C'CwwG_G
Cuts at: 513 1065 2004 2126 2183 2479 2714 513
Size: 552 939 122 57 296 235 3074
Fragments arranged by size:
3074 939 552 296 235 122 57
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3302 3319 3472 3657 4102 325
Size: 1255 1722 17 153 185 445 1498
Fragments arranged by size:
1722 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2299 3521 5233
Size: 274 80 33 51 1443 322 1222 1712
Cuts at: 5233 96
Size: 138
Fragments arranged by size:
1712 1443 1222 322 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5235 5267 5235
Size: 32 5243
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5275
XbaI T'CTAG_A
Cuts at: 2611 2611
Size: 5275
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2201 2201
Size: 5275
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5275
XmaI C'CCGG_G
Cuts at: 1870 2063 2600 1870
Size: 193 537 4545
Fragments arranged by size:
4545 537 193
XmnI GAAnn'nnTTC
Cuts at: 3404 3404
Size: 5275
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3083 276
Size: 53 83 186 936 1549 2468
Fragments arranged by size:
2468 1549 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI
PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I DraIII EcoICRI
EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI
PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI
SrfI SwaI