Restriction map for
pFN21AB7406
(Circular) (Six-base) MAPSORT of: pFN21AB7406.seq Check: 1059 from: 1 to: 5362
pFN21AB7406 5362 bp
With 182 enzymes: SgfI *
January 16, 2009 15:26 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3172 278
Size: 53 83 186 936 1636 2468
Fragments arranged by size:
2468 1636 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2579 2705 1937
Size: 642 126 4594
Fragments arranged by size:
4594 642 126
Acc65I G'GTAC_C
Cuts at: 2683 2683
Size: 5362
AclI AA'CG_TT
Cuts at: 1563 3489 3862 1563
Size: 1926 373 3063
Fragments arranged by size:
3063 1926 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3425 4809 5077 1632
Size: 1793 1384 268 1917
Fragments arranged by size:
1917 1793 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5165
AflIII A'CryG_T
Cuts at: 1203 2088 4261 5238 1203
Size: 885 2173 977 1327
Fragments arranged by size:
2173 1327 977 885
AgeI A'CCGG_T
Cuts at: 4193 4193
Size: 5362
AhdI GACnn_n'nnGTC
Cuts at: 4091 4091
Size: 5362
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5362
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5362
AlwNI CAG_nnn'CTG
Cuts at: 3105 4677 3105
Size: 1572 3790
ApaLI G'TGCA_C
Cuts at: 3419 4575 3419
Size: 1156 4206
ApoI r'AATT_y
Cuts at: 1493 2671 2897 3049 5158 1493
Size: 1178 226 152 2109 1697
Fragments arranged by size:
2109 1697 1178 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3916 160
Size: 872 2884 1606
Fragments arranged by size:
2884 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5362
AvaI C'yCGr_G
Cuts at: 1870 1943 2155 2687 1870
Size: 73 212 532 4545
Fragments arranged by size:
4545 532 212 73
BamHI G'GATC_C
Cuts at: 2692 3059 2692
Size: 367 4995
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2060 2683 4138 618
Size: 325 217 627 273 623 1455 1842
Fragments arranged by size:
1842 1455 627 623 325 273 217
BanII G_rGCy'C
Cuts at: 1391 2681 1391
Size: 1290 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4391
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3553 3587 1903
Size: 34 1616 34 3678
Fragments arranged by size:
3678 1616 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3254 4464 3254
Size: 1210 4152
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5362
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3973 136
Size: 107 122 71 631 605 2301 1525
Fragments arranged by size:
2301 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5357 5357
Size: 5362
BlpI GC'TnA_GC
Cuts at: 2779 2779
Size: 5362
Bme1580I G_kGCm'C
Cuts at: 1790 2063 3423 4579 1790
Size: 273 1360 1156 2573
Fragments arranged by size:
2573 1360 1156 273
BmgBI CAC'GTC
Cuts at: 1318 2089 1318
Size: 771 4591
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3093 4051 442
Size: 416 53 83 399 24 1676 958 1753
Fragments arranged by size:
1753 1676 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5362
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2102 2168 2216 4022 1239
Size: 863 66 48 1806 2579
Fragments arranged by size:
2579 1806 863 66 48
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2126 3487 4352 4650 2126
Size: 1361 865 298 2838
Fragments arranged by size:
2838 1361 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4025 882
Size: 617 2526 2219
Fragments arranged by size:
2526 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3153 493
Size: 711 1949 2702
Fragments arranged by size:
2702 1949 711
BsaBI GATnn'nnATC
Cuts at: 5356 5356
Size: 5362
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2022 3169 3551 4186
Size: 53 83 186 936 489 1147 382 635
Cuts at: 4186 275
Size: 1451
Fragments arranged by size:
1451 1147 936 635 489 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3795 4193 4467 4614 5025 3795
Size: 398 274 147 411 4132
Fragments arranged by size:
4132 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2075 2105 1178
Size: 30 165 30 672 30 4435
Fragments arranged by size:
4435 672 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5362
BseYI C'CCAG_C
Cuts at: 2118 2306 4565 5061 2118
Size: 188 2259 496 2419
Fragments arranged by size:
2419 2259 496 188
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4789
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2812 3573 4601 1540
Size: 275 186 811 761 1028 2301
Fragments arranged by size:
2301 1028 811 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3423 3508 4579 3423
Size: 85 1071 4206
Fragments arranged by size:
4206 1071 85
BsmI GAATG_Cn'
Cuts at: 2873 2966 2873
Size: 93 5269
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2063 2681 3423 3508 4579 1391
Size: 399 273 618 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 618 399 273 85
BspEI T'CCGG_A
Cuts at: 5025 5025
Size: 5362
BspHI T'CATG_A
Cuts at: 3251 4981 3251
Size: 1730 3632
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2717 844
Size: 1873 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2200 2233 3249 1394
Size: 429 377 33 1016 3507
Fragments arranged by size:
3507 1016 429 377 33
BsrDI GCAATG_nn'
Cuts at: 65 1248 3857 4031 65
Size: 1183 2609 174 1396
Fragments arranged by size:
2609 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2136 4006 4193 1700
Size: 110 326 1870 187 2869
Fragments arranged by size:
2869 1870 326 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5362
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5362
BssSI C'ACGA_G
Cuts at: 3422 4434 3422
Size: 1012 4350
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5362
BstBI TT'CG_AA
Cuts at: 4166 4166
Size: 5362
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5362
BstXI CCAn_nnnn'nTGG
Cuts at: 2611 2611
Size: 5362
BstYI r'GATC_y
Cuts at: 1972 2029 2692 3059 3444 3461 4913 4999 5011
Size: 57 663 367 385 17 1452 86 12
Cuts at: 5011 5357 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 663 385 367 346 86 57
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2251 513
Size: 552 939 247 3624
Fragments arranged by size:
3624 939 552 247
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4623
Fragments arranged by size:
4623 683 56
BtsI GCAGTG_nn'
Cuts at: 2545 2878 3672 3692 2545
Size: 333 794 20 4215
Fragments arranged by size:
4215 794 333 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5362
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5327
DraI TTT'AAA
Cuts at: 2666 2666
Size: 5362
DraIII CAC_nnn'GTG
Cuts at: 2572 2572
Size: 5362
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4369 809
Size: 507 3053 1802
Fragments arranged by size:
3053 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2124 2211 2809
Size: 54 1425 50 275 18 294 87 598
Cuts at: 2809 3698 5327 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 598 294 275 87 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2809 1537
Size: 275 997 4090
Fragments arranged by size:
4090 997 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2505 3292 1353
Size: 1152 787 3423
Fragments arranged by size:
3423 1152 787
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3949 4323 4469 387
Size: 1064 138 2360 374 146 1280
Fragments arranged by size:
2360 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2102 2168 2216 3425 4022 4809 5077
Size: 393 470 66 48 1209 597 787 268
Cuts at: 5077 1239
Size: 1524
Fragments arranged by size:
1524 1209 787 597 470 393 268 66
48
EcoO109I rG'GnC_Cy
Cuts at: 2519 2519
Size: 5362
EcoRI G'AATT_C
Cuts at: 2671 3049 2671
Size: 378 4984
EcoRV GAT'ATC
Cuts at: 2320 2320
Size: 5362
FspI TGC'GCA
Cuts at: 3868 3868
Size: 5362
HaeII r_GCGC'y
Cuts at: 1678 4509 1678
Size: 2831 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2227 2259 4003 4035 4077
Size: 32 135 32 655 32 1744 32 42
Cuts at: 4077 4109 1373
Size: 32 2626
Fragments arranged by size:
2626 1744 655 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2706 2952 669
Size: 988 281 768 246 3079
Fragments arranged by size:
3079 988 768 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5362
HpaI GTT'AAC
Cuts at: 2952 2952
Size: 5362
KpnI G_GTAC'C
Cuts at: 2687 2687
Size: 5362
MfeI C'AATT_G
Cuts at: 2961 2961
Size: 5362
MluI A'CGCG_T
Cuts at: 5238 5238
Size: 5362
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4476 4660 1305
Size: 3171 184 2007
Fragments arranged by size:
3171 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2213 10
Size: 54 1425 343 381 3159
Fragments arranged by size:
3159 1425 381 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3320 3679 3838 518
Size: 648 2154 359 159 2042
Fragments arranged by size:
2154 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2113 2122 2129 2458 2487 2778 3455 4603
Size: 507 9 7 329 29 291 677 1148
Cuts at: 4603 4848 1606
Size: 245 2120
Fragments arranged by size:
2120 1148 677 507 329 291 245 29
9 7
NaeI GCC'GGC
Cuts at: 2138 2138
Size: 5362
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3871
Fragments arranged by size:
3871 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5362
NgoMIV G'CCGG_C
Cuts at: 2136 2136
Size: 5362
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5362
NotI GC'GGCC_GC
Cuts at: 2809 2809
Size: 5362
NspI r_CATG'y
Cuts at: 1132 1229 2720 4265 1132
Size: 97 1491 1545 2229
Fragments arranged by size:
2229 1545 1491 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5362
PciI A'CATG_T
Cuts at: 4261 4261
Size: 5362
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5362
PmeI GTTT'AAAC
Cuts at: 2666 2666
Size: 5362
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3431 3463 4944 4976 3431
Size: 32 1481 32 3817
Fragments arranged by size:
3817 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 2458 1613
Size: 845 4517
PsiI TTA'TAA
Cuts at: 2932 2932
Size: 5362
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2410 2442 2410
Size: 32 5330
PstI C_TGCA'G
Cuts at: 830 2714 830
Size: 1884 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5362
PvuII CAG'CTG
Cuts at: 2122 2458 2487 2122
Size: 336 29 4997
Fragments arranged by size:
4997 336 29
SalI G'TCGA_C
Cuts at: 1936 2704 1936
Size: 768 4594
SbfI CC_TGCA'GG
Cuts at: 2714 2714
Size: 5362
ScaI AGT'ACT
Cuts at: 3610 5322 3610
Size: 1712 3650
SfcI C'TryA_G
Cuts at: 826 1045 2413 2710 3845 4526 4717 826
Size: 219 1368 297 1135 681 191 1471
Fragments arranged by size:
1471 1368 1135 681 297 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5362
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5362
SmaI CCC'GGG
Cuts at: 1872 2689 1872
Size: 817 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2141 3466 4367 4629 820
Size: 197 926 198 1325 901 262 1553
Fragments arranged by size:
1553 1325 926 901 262 198 197
SnaBI TAC'GTA
Cuts at: 493 3153 493
Size: 2660 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5362
SphI G_CATG'C
Cuts at: 1132 2720 1132
Size: 1588 3774
SspI AAT'ATT
Cuts at: 5 52 3286 5
Size: 47 3234 2081
Fragments arranged by size:
3234 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5362
StyI C'CwwG_G
Cuts at: 513 1065 2004 2220 2522 2801 513
Size: 552 939 216 302 279 3074
Fragments arranged by size:
3074 939 552 302 279 216
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2489 3389 3406 3559 3744 4189 325
Size: 1255 909 900 17 153 185 445 1498
Fragments arranged by size:
1498 1255 909 900 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3608 5320 96
Size: 274 80 33 51 1443 1631 1712 138
Fragments arranged by size:
1712 1631 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5322 5354 5322
Size: 32 5330
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5362
XbaI T'CTAG_A
Cuts at: 2698 2698
Size: 5362
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5362
XmaI C'CCGG_G
Cuts at: 1870 2687 1870
Size: 817 4545
XmnI GAAnn'nnTTC
Cuts at: 3491 3491
Size: 5362
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3170 276
Size: 53 83 186 936 1636 2468
Fragments arranged by size:
2468 1636 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DraIII DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PsrI
PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
EcoICRI EcoNI FalI FseI FspAI KasI NarI NruI
NsiI PacI PfoI PmlI PpuMI PspOMI PspXI RsrII
SacI SacII SanDI SapI SexAI SfiI SfoI SrfI
SwaI XcmI