Restriction map for
pFN21AB7125
(Circular) (Six-base) MAPSORT of: pFN21AB7125.seq Check: 6351 from: 1 to: 5641
pFN21AB7125 5641 bp
With 182 enzymes: SgfI *
January 16, 2009 15:26 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3451 278
Size: 53 83 186 936 1915 2468
Fragments arranged by size:
2468 1915 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2028 2984 1937
Size: 91 956 4594
Fragments arranged by size:
4594 956 91
Acc65I G'GTAC_C
Cuts at: 2962 2962
Size: 5641
AclI AA'CG_TT
Cuts at: 1563 3768 4141 1563
Size: 2205 373 3063
Fragments arranged by size:
3063 2205 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3704 5088 5356 1632
Size: 2072 1384 268 1917
Fragments arranged by size:
2072 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5444
AflIII A'CryG_T
Cuts at: 1203 4540 5517 1203
Size: 3337 977 1327
Fragments arranged by size:
3337 1327 977
AgeI A'CCGG_T
Cuts at: 4472 4472
Size: 5641
AhdI GACnn_n'nnGTC
Cuts at: 4370 4370
Size: 5641
AleI CACnn'nnGTG
Cuts at: 1166 2748 1166
Size: 1582 4059
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2258 2870 1184
Size: 1074 612 3955
Fragments arranged by size:
3955 1074 612
AlwNI CAG_nnn'CTG
Cuts at: 3384 4956 3384
Size: 1572 4069
ApaLI G'TGCA_C
Cuts at: 3698 4854 3698
Size: 1156 4485
ApoI r'AATT_y
Cuts at: 1493 2134 2950 3176 3328 5437 1493
Size: 641 816 226 152 2109 1697
Fragments arranged by size:
2109 1697 816 641 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4195 160
Size: 872 3163 1606
Fragments arranged by size:
3163 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5641
AvaI C'yCGr_G
Cuts at: 1870 1943 2966 1870
Size: 73 1023 4545
Fragments arranged by size:
4545 1023 73
BamHI G'GATC_C
Cuts at: 2058 2971 3338 2058
Size: 913 367 4361
Fragments arranged by size:
4361 913 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2962 4417 618
Size: 325 217 627 1175 1455 1842
Fragments arranged by size:
1842 1455 1175 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2184 2960 1391
Size: 793 776 4072
Fragments arranged by size:
4072 793 776
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2746 928
Size: 971 847 3823
Fragments arranged by size:
3823 971 847
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3832 3866 1903
Size: 34 1895 34 3678
Fragments arranged by size:
3678 1895 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3533 4743 3533
Size: 1210 4431
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5641
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4252 136
Size: 107 122 71 631 605 2580 1525
Fragments arranged by size:
2580 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5636 5636
Size: 5641
BlpI GC'TnA_GC
Cuts at: 3058 3058
Size: 5641
Bme1580I G_kGCm'C
Cuts at: 1790 3702 4858 1790
Size: 1912 1156 2573
Fragments arranged by size:
2573 1912 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5641
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3372 4330 442
Size: 416 53 83 399 24 1955 958 1753
Fragments arranged by size:
1955 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 2235 1056
Size: 1179 4462
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2744 4301 1239
Size: 1505 1557 2579
Fragments arranged by size:
2579 1557 1505
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3766 4631 4929 3766
Size: 865 298 4478
Fragments arranged by size:
4478 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2814 4304 882
Size: 617 1315 1490 2219
Fragments arranged by size:
2219 1490 1315 617
BsaAI yAC'GTr
Cuts at: 493 1204 3432 493
Size: 711 2228 2702
Fragments arranged by size:
2702 2228 711
BsaBI GATnn'nnATC
Cuts at: 2678 5635 2678
Size: 2957 2684
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3448 3830 4465 275
Size: 53 83 186 936 1915 382 635 1451
Fragments arranged by size:
1915 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4074 4472 4746 4893 5304 4074
Size: 398 274 147 411 4411
Fragments arranged by size:
4411 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2699 2729 1178
Size: 30 165 30 1296 30 4090
Fragments arranged by size:
4090 1296 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5641
BseYI C'CCAG_C
Cuts at: 4844 5340 4844
Size: 496 5145
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2099 1163
Size: 573 363 4705
Fragments arranged by size:
4705 573 363
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3091 3852 4880 1540
Size: 275 186 1090 761 1028 2301
Fragments arranged by size:
2301 1090 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3702 3787 4858 3702
Size: 85 1071 4485
Fragments arranged by size:
4485 1071 85
BsmI GAATG_Cn'
Cuts at: 2723 2913 3152 3245 2723
Size: 190 239 93 5119
Fragments arranged by size:
5119 239 190 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2184 2960 3702 3787 4858 1391
Size: 399 394 776 742 85 1071 2174
Fragments arranged by size:
2174 1071 776 742 399 394 85
BspEI T'CCGG_A
Cuts at: 5304 5304
Size: 5641
BspHI T'CATG_A
Cuts at: 3530 5260 3530
Size: 1730 3911
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2741 2996 844
Size: 1897 255 3489
Fragments arranged by size:
3489 1897 255
BsrBI CCG'CTC
Cuts at: 1394 1823 3528 1394
Size: 429 1705 3507
Fragments arranged by size:
3507 1705 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2118 2220 2327 2736 4136 4310 65
Size: 1183 870 102 107 409 1400 174 1396
Fragments arranged by size:
1400 1396 1183 870 409 174 107 102
BsrFI r'CCGG_y
Cuts at: 1700 1810 2505 4285 4472 1700
Size: 110 695 1780 187 2869
Fragments arranged by size:
2869 1780 695 187 110
BsrGI T'GTAC_A
Cuts at: 96 2187 96
Size: 2091 3550
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5641
BssSI C'ACGA_G
Cuts at: 3701 4713 3701
Size: 1012 4629
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5641
BstBI TT'CG_AA
Cuts at: 4445 4445
Size: 5641
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5641
BstXI CCAn_nnnn'nTGG
Cuts at: 2368 2368
Size: 5641
BstYI r'GATC_y
Cuts at: 1972 2058 2971 3338 3723 3740 5192 5278 5290
Size: 86 913 367 385 17 1452 86 12
Cuts at: 5290 5636 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 913 385 367 346 86 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2361 513
Size: 552 1296 3793
Fragments arranged by size:
3793 1296 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4902
Fragments arranged by size:
4902 683 56
BtsI GCAGTG_nn'
Cuts at: 2087 3157 3951 3971 2087
Size: 1070 794 20 3757
Fragments arranged by size:
3757 1070 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5641
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2203 2238 529
Size: 35 1639 35 3932
Fragments arranged by size:
3932 1639 35 35
DraI TTT'AAA
Cuts at: 2719 2945 2719
Size: 226 5415
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4648 809
Size: 507 3332 1802
Fragments arranged by size:
3332 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2358 2382 2559
Size: 54 1425 50 275 18 528 24 177
Cuts at: 2559 3088 3977 5606 8
Size: 529 889 1629 43
Fragments arranged by size:
1629 1425 889 529 528 275 177 54
50 43 24 18
EagI C'GGCC_G
Cuts at: 1537 1812 3088 1537
Size: 275 1276 4090
Fragments arranged by size:
4090 1276 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3571 1353
Size: 2218 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4228 4602 4748 387
Size: 1064 138 2639 374 146 1280
Fragments arranged by size:
2639 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2744 3704 4301 5088 5356 1239
Size: 393 1112 960 597 787 268 1524
Fragments arranged by size:
1524 1112 960 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2950 3328 2950
Size: 378 5263
FspI TGC'GCA
Cuts at: 4147 4147
Size: 5641
HaeII r_GCGC'y
Cuts at: 1678 4788 1678
Size: 3110 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2628 2660 4282 4314 4356
Size: 32 135 32 1056 32 1622 32 42
Cuts at: 4356 4388 1373
Size: 32 2626
Fragments arranged by size:
2626 1622 1056 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2046 2596 2985 3231 669
Size: 988 281 108 550 389 246 3079
Fragments arranged by size:
3079 988 550 389 281 246 108
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5641
HpaI GTT'AAC
Cuts at: 3231 3231
Size: 5641
KpnI G_GTAC'C
Cuts at: 2966 2966
Size: 5641
MfeI C'AATT_G
Cuts at: 3240 3240
Size: 5641
MluI A'CGCG_T
Cuts at: 5517 5517
Size: 5641
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2040 4755 4939 1305
Size: 735 2715 184 2007
Fragments arranged by size:
2715 2007 735 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2360 2384 2561 10
Size: 54 1425 343 528 24 177 3090
Fragments arranged by size:
3090 1425 528 343 177 54 24
MslI CAynn'nnrTG
Cuts at: 518 1166 2123 2354 2748 2918 3599 3958 4117
Size: 648 957 231 394 170 681 359 159
Cuts at: 4117 518
Size: 2042
Fragments arranged by size:
2042 957 681 648 394 359 231 170
159
MspA1I CmG'CkG
Cuts at: 1606 3057 3734 4882 5127 1606
Size: 1451 677 1148 245 2120
Fragments arranged by size:
2120 1451 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2361 513
Size: 552 1296 3793
Fragments arranged by size:
3793 1296 552
NdeI CA'TA_TG
Cuts at: 387 2556 387
Size: 2169 3472
NheI G'CTAG_C
Cuts at: 1052 2231 1052
Size: 1179 4462
NotI GC'GGCC_GC
Cuts at: 3088 3088
Size: 5641
NspI r_CATG'y
Cuts at: 1132 1229 2035 2206 2408 2999 4544 1132
Size: 97 806 171 202 591 1545 2229
Fragments arranged by size:
2229 1545 806 591 202 171 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5641
PciI A'CATG_T
Cuts at: 4540 4540
Size: 5641
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5641
PmeI GTTT'AAAC
Cuts at: 2945 2945
Size: 5641
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3710 3742 5223 5255 3710
Size: 32 1481 32 4096
Fragments arranged by size:
4096 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5641
PsiI TTA'TAA
Cuts at: 3211 3211
Size: 5641
PstI C_TGCA'G
Cuts at: 830 2993 830
Size: 2163 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5641
SalI G'TCGA_C
Cuts at: 1936 2983 1936
Size: 1047 4594
SbfI CC_TGCA'GG
Cuts at: 2993 2993
Size: 5641
ScaI AGT'ACT
Cuts at: 2493 3889 5601 2493
Size: 1396 1712 2533
Fragments arranged by size:
2533 1712 1396
SfcI C'TryA_G
Cuts at: 826 1045 2628 2989 4124 4805 4996 826
Size: 219 1583 361 1135 681 191 1471
Fragments arranged by size:
1583 1471 1135 681 361 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5641
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5641
SmaI CCC'GGG
Cuts at: 1872 2968 1872
Size: 1096 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3745 4646 4908 820
Size: 197 926 1802 901 262 1553
Fragments arranged by size:
1802 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3432 493
Size: 2939 2702
SpeI A'CTAG_T
Cuts at: 152 2050 152
Size: 1898 3743
SphI G_CATG'C
Cuts at: 1132 2206 2999 1132
Size: 1074 793 3774
Fragments arranged by size:
3774 1074 793
SspI AAT'ATT
Cuts at: 5 52 2262 3565 5
Size: 47 2210 1303 2081
Fragments arranged by size:
2210 2081 1303 47
StuI AGG'CCT
Cuts at: 1517 2067 1517
Size: 550 5091
StyI C'CwwG_G
Cuts at: 513 1065 2361 3080 513
Size: 552 1296 719 3074
Fragments arranged by size:
3074 1296 719 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2435 3668 3685 3838 4023 4468 325
Size: 1255 855 1233 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1233 855 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2187 2491 3887
Size: 274 80 33 51 1443 210 304 1396
Cuts at: 3887 5599 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1396 304 274 210 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5601 5633 5601
Size: 32 5609
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5641
XbaI T'CTAG_A
Cuts at: 2977 2977
Size: 5641
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5641
XmaI C'CCGG_G
Cuts at: 1870 2966 1870
Size: 1096 4545
XmnI GAAnn'nnTTC
Cuts at: 3770 3770
Size: 5641
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3449 276
Size: 53 83 186 936 1915 2468
Fragments arranged by size:
2468 1915 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI
PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI