Restriction map for
pFN21AB6907
(Circular) (Six-base) MAPSORT of: pFN21AB6907.seq Check: 2413 from: 1 to: 5317
pFN21AB6907 5317 bp
With 182 enzymes: SgfI *
October 20, 2009 10:41 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3127 278
Size: 53 83 186 936 1591 2468
Fragments arranged by size:
2468 1591 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2660 1937
Size: 723 4594
Acc65I G'GTAC_C
Cuts at: 2638 2638
Size: 5317
AclI AA'CG_TT
Cuts at: 1563 3444 3817 1563
Size: 1881 373 3063
Fragments arranged by size:
3063 1881 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2336 3380 4764 5032 1632
Size: 704 1044 1384 268 1917
Fragments arranged by size:
1917 1384 1044 704 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5120
AflIII A'CryG_T
Cuts at: 1203 4216 5193 1203
Size: 3013 977 1327
Fragments arranged by size:
3013 1327 977
AgeI A'CCGG_T
Cuts at: 4148 4148
Size: 5317
AhdI GACnn_n'nnGTC
Cuts at: 2572 4046 2572
Size: 1474 3843
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5317
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5317
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2459 2491 2459
Size: 32 5285
AlwNI CAG_nnn'CTG
Cuts at: 2125 3060 4632 2125
Size: 935 1572 2810
Fragments arranged by size:
2810 1572 935
ApaI G_GGCC'C
Cuts at: 2258 2457 2258
Size: 199 5118
ApaLI G'TGCA_C
Cuts at: 3374 4530 3374
Size: 1156 4161
ApoI r'AATT_y
Cuts at: 1493 2626 2852 3004 5113 1493
Size: 1133 226 152 2109 1697
Fragments arranged by size:
2109 1697 1133 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3871 160
Size: 872 2839 1606
Fragments arranged by size:
2839 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5317
AvaI C'yCGr_G
Cuts at: 1870 1943 2251 2457 2517 2642 1870
Size: 73 308 206 60 125 4545
Fragments arranged by size:
4545 308 206 125 73 60
BamHI G'GATC_C
Cuts at: 2647 3014 2647
Size: 367 4950
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2497 2638 4093 618
Size: 325 217 627 710 141 1455 1842
Fragments arranged by size:
1842 1455 710 627 325 217 141
BanII G_rGCy'C
Cuts at: 1391 2022 2258 2457 2636 1391
Size: 631 236 199 179 4072
Fragments arranged by size:
4072 631 236 199 179
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4346
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3508 3542 1903
Size: 34 1571 34 3678
Fragments arranged by size:
3678 1571 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3209 4419 3209
Size: 1210 4107
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5317
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3928 136
Size: 107 122 71 631 605 2256 1525
Fragments arranged by size:
2256 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5312 5312
Size: 5317
BlpI GC'TnA_GC
Cuts at: 2010 2734 2010
Size: 724 4593
Bme1580I G_kGCm'C
Cuts at: 1790 2258 2457 3378 4534 1790
Size: 468 199 921 1156 2573
Fragments arranged by size:
2573 1156 921 468 199
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5317
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3048 4006 442
Size: 416 53 83 399 24 1631 958 1753
Fragments arranged by size:
1753 1631 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5317
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2282 2306 3977 1239
Size: 1043 24 1671 2579
Fragments arranged by size:
2579 1671 1043 24
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3442 4307 4605 3442
Size: 865 298 4154
Fragments arranged by size:
4154 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3980 882
Size: 617 2481 2219
Fragments arranged by size:
2481 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2400 3108 493
Size: 711 1196 708 2702
Fragments arranged by size:
2702 1196 711 708
BsaBI GATnn'nnATC
Cuts at: 2342 5311 2342
Size: 2969 2348
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2412 3124 3506 4141
Size: 53 83 186 936 879 712 382 635
Cuts at: 4141 275
Size: 1451
Fragments arranged by size:
1451 936 879 712 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 2334 3750 4148 4422 4569 4980 2334
Size: 1416 398 274 147 411 2671
Fragments arranged by size:
2671 1416 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2459 2489 1178
Size: 30 165 30 1056 30 4006
Fragments arranged by size:
4006 1056 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2075 2480 2507 1186
Size: 889 405 27 3996
Fragments arranged by size:
3996 889 405 27
BseYI C'CCAG_C
Cuts at: 2170 4520 5016 2170
Size: 2350 496 2471
Fragments arranged by size:
2471 2350 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2260 1163
Size: 573 524 4220
Fragments arranged by size:
4220 573 524
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2767 3528 4556 1540
Size: 275 186 766 761 1028 2301
Fragments arranged by size:
2301 1028 766 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2073 3378 3463 4534 2073
Size: 1305 85 1071 2856
Fragments arranged by size:
2856 1305 1071 85
BsmI GAATG_Cn'
Cuts at: 2828 2921 2828
Size: 93 5224
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2022 2073 2258 2457 2636 3378 3463
Size: 399 232 51 185 199 179 742 85
Cuts at: 3463 4534 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 232 199 185 179
85 51
BspEI T'CCGG_A
Cuts at: 4980 4980
Size: 5317
BspHI T'CATG_A
Cuts at: 3206 4936 3206
Size: 1730 3587
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2672 844
Size: 1828 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3204 1394
Size: 429 1381 3507
Fragments arranged by size:
3507 1381 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3812 3986 65
Size: 1183 2564 174 1396
Fragments arranged by size:
2564 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3961 4148 1700
Size: 110 2151 187 2869
Fragments arranged by size:
2869 2151 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5317
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5317
BssSI C'ACGA_G
Cuts at: 3377 4389 3377
Size: 1012 4305
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5317
BstBI TT'CG_AA
Cuts at: 4121 4121
Size: 5317
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5317
BstXI CCAn_nnnn'nTGG
Cuts at: 2215 2215
Size: 5317
BstYI r'GATC_y
Cuts at: 1972 2115 2647 3014 3399 3416 4868 4954 4966
Size: 143 532 367 385 17 1452 86 12
Cuts at: 4966 5312 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 532 385 367 346 143 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2487 513
Size: 552 939 483 3343
Fragments arranged by size:
3343 939 552 483
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4578
Fragments arranged by size:
4578 683 56
BtsI GCAGTG_nn'
Cuts at: 2833 3627 3647 2833
Size: 794 20 4503
Fragments arranged by size:
4503 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5317
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5282
DraI TTT'AAA
Cuts at: 2621 2621
Size: 5317
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2201 4324 809
Size: 507 885 2123 1802
Fragments arranged by size:
2123 1802 885 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2181 2764 3653
Size: 54 1425 50 275 18 351 583 889
Cuts at: 3653 5282 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 583 351 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2764 1537
Size: 275 952 4090
Fragments arranged by size:
4090 952 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2096 3247 1353
Size: 743 1151 3423
Fragments arranged by size:
3423 1151 743
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3904 4278 4424 387
Size: 1064 138 2315 374 146 1280
Fragments arranged by size:
2315 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2282 2306 2336 3380 3977 4764 5032
Size: 393 650 24 30 1044 597 787 268
Cuts at: 5032 1239
Size: 1524
Fragments arranged by size:
1524 1044 787 650 597 393 268 30
24
EcoO109I rG'GnC_Cy
Cuts at: 2164 2255 2454 2164
Size: 91 199 5027
Fragments arranged by size:
5027 199 91
EcoRI G'AATT_C
Cuts at: 2626 3004 2626
Size: 378 4939
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2560 2560
Size: 5317
FspI TGC'GCA
Cuts at: 3823 3823
Size: 5317
HaeII r_GCGC'y
Cuts at: 1678 4464 1678
Size: 2786 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2057 2089 2357 2389 2558
Size: 32 135 32 485 32 268 32 169
Cuts at: 2558 2590 3958 3990 4032 4064 1373
Size: 32 1368 32 42 32 2626
Fragments arranged by size:
2626 1368 485 268 169 135 42 32
32 32 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2080 2359 2661 2907 669
Size: 988 281 142 279 302 246 3079
Fragments arranged by size:
3079 988 302 281 279 246 142
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5317
HpaI GTT'AAC
Cuts at: 2359 2907 2359
Size: 548 4769
KpnI G_GTAC'C
Cuts at: 2642 2642
Size: 5317
MfeI C'AATT_G
Cuts at: 2916 2916
Size: 5317
MluI A'CGCG_T
Cuts at: 5193 5193
Size: 5317
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4431 4615 1305
Size: 3126 184 2007
Fragments arranged by size:
3126 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3495
Fragments arranged by size:
3495 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3275 3634 3793 518
Size: 648 2109 359 159 2042
Fragments arranged by size:
2109 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2035 2051 2733 3410 4558 4803 1606
Size: 429 16 682 677 1148 245 2120
Fragments arranged by size:
2120 1148 682 677 429 245 16
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3826
Fragments arranged by size:
3826 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5317
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5317
NotI GC'GGCC_GC
Cuts at: 2764 2764
Size: 5317
NspI r_CATG'y
Cuts at: 1132 1229 2675 4220 1132
Size: 97 1446 1545 2229
Fragments arranged by size:
2229 1545 1446 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5317
PciI A'CATG_T
Cuts at: 4216 4216
Size: 5317
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2125 1108
Size: 1017 4300
PfoI T'CCnGG_A
Cuts at: 2109 2118 2109
Size: 9 5308
PmeI GTTT'AAAC
Cuts at: 2621 2621
Size: 5317
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2459 2491 3386 3418 4899 4931 2459
Size: 32 895 32 1481 32 2845
Fragments arranged by size:
2845 1481 895 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5317
PsiI TTA'TAA
Cuts at: 2887 2887
Size: 5317
PspOMI G'GGCC_C
Cuts at: 2254 2453 2254
Size: 199 5118
PstI C_TGCA'G
Cuts at: 830 2669 830
Size: 1839 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5317
PvuII CAG'CTG
Cuts at: 2035 2035
Size: 5317
SalI G'TCGA_C
Cuts at: 1936 2659 1936
Size: 723 4594
SapI GCTCTTCn'nnn_
Cuts at: 2096 2096
Size: 5317
SbfI CC_TGCA'GG
Cuts at: 2669 2669
Size: 5317
ScaI AGT'ACT
Cuts at: 3565 5277 3565
Size: 1712 3605
SfcI C'TryA_G
Cuts at: 826 1045 2527 2665 3800 4481 4672 826
Size: 219 1482 138 1135 681 191 1471
Fragments arranged by size:
1482 1471 1135 681 219 191 138
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5317
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5317
SmaI CCC'GGG
Cuts at: 1872 2253 2459 2519 2644 1872
Size: 381 206 60 125 4545
Fragments arranged by size:
4545 381 206 125 60
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3421 4322 4584 820
Size: 197 926 1478 901 262 1553
Fragments arranged by size:
1553 1478 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2400 3108 493
Size: 1907 708 2702
Fragments arranged by size:
2702 1907 708
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5317
SphI G_CATG'C
Cuts at: 1132 2675 1132
Size: 1543 3774
SspI AAT'ATT
Cuts at: 5 52 3241 5
Size: 47 3189 2081
Fragments arranged by size:
3189 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5317
StyI C'CwwG_G
Cuts at: 513 1065 2004 2502 2756 513
Size: 552 939 498 254 3074
Fragments arranged by size:
3074 939 552 498 254
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2065 2515 2579 3344 3361 3514 3699
Size: 1255 485 450 64 765 17 153 185
Cuts at: 3699 4144 325
Size: 445 1498
Fragments arranged by size:
1498 1255 765 485 450 445 185 153
64 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2154 2385 3563
Size: 274 80 33 51 1443 177 231 1178
Cuts at: 3563 5275 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1178 274 231 177 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5277 5309 5277
Size: 32 5285
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5317
XbaI T'CTAG_A
Cuts at: 2653 2653
Size: 5317
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2509 2509
Size: 5317
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5317
XmaI C'CCGG_G
Cuts at: 1870 2251 2457 2517 2642 1870
Size: 381 206 60 125 4545
Fragments arranged by size:
4545 381 206 125 60
XmnI GAAnn'nnTTC
Cuts at: 3446 3446
Size: 5317
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3125 276
Size: 53 83 186 936 1591 2468
Fragments arranged by size:
2468 1591 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI
PstI PvuI PvuII SalI SapI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XcmI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AscI AvrII BaeI BbeI BbvCI BfrBI
BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PmlI PpuMI PspXI PsrI RsrII
SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI