Restriction map for
pFN21AB6888
(Circular) (Six-base) MAPSORT of: pFN21AB6888.seq Check: 1882 from: 1 to: 5308
pFN21AB6888 5308 bp
With 182 enzymes: SgfI *
October 20, 2009 10:44 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3118 278
Size: 53 83 186 936 1582 2468
Fragments arranged by size:
2468 1582 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2651 1937
Size: 714 4594
Acc65I G'GTAC_C
Cuts at: 2629 2629
Size: 5308
AclI AA'CG_TT
Cuts at: 1563 3435 3808 1563
Size: 1872 373 3063
Fragments arranged by size:
3063 1872 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3371 4755 5023 1632
Size: 1739 1384 268 1917
Fragments arranged by size:
1917 1739 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5111
AflIII A'CryG_T
Cuts at: 1203 4207 5184 1203
Size: 3004 977 1327
Fragments arranged by size:
3004 1327 977
AgeI A'CCGG_T
Cuts at: 2086 4139 2086
Size: 2053 3255
AhdI GACnn_n'nnGTC
Cuts at: 4037 4037
Size: 5308
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5308
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5308
AlwNI CAG_nnn'CTG
Cuts at: 3051 4623 3051
Size: 1572 3736
ApaLI G'TGCA_C
Cuts at: 3365 4521 3365
Size: 1156 4152
ApoI r'AATT_y
Cuts at: 1493 2617 2843 2995 5104 1493
Size: 1124 226 152 2109 1697
Fragments arranged by size:
2109 1697 1124 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3862 160
Size: 872 2830 1606
Fragments arranged by size:
2830 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5308
AvaI C'yCGr_G
Cuts at: 1870 1943 2633 1870
Size: 73 690 4545
Fragments arranged by size:
4545 690 73
BamHI G'GATC_C
Cuts at: 2638 3005 2638
Size: 367 4941
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2089 2629 4084 618
Size: 325 217 627 302 540 1455 1842
Fragments arranged by size:
1842 1455 627 540 325 302 217
BanII G_rGCy'C
Cuts at: 1391 2627 1391
Size: 1236 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4337
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3499 3533 1903
Size: 34 1562 34 3678
Fragments arranged by size:
3678 1562 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3200 4410 3200
Size: 1210 4098
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5308
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3919 136
Size: 107 122 71 631 605 2247 1525
Fragments arranged by size:
2247 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5303 5303
Size: 5308
BlpI GC'TnA_GC
Cuts at: 2725 2725
Size: 5308
Bme1580I G_kGCm'C
Cuts at: 1790 2094 3369 4525 1790
Size: 304 1275 1156 2573
Fragments arranged by size:
2573 1275 1156 304
BmgBI CAC'GTC
Cuts at: 1318 2404 1318
Size: 1086 4222
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2431 2480 3039
Size: 416 53 83 399 24 1014 49 559
Cuts at: 3039 3997 442
Size: 958 1753
Fragments arranged by size:
1753 1014 958 559 416 399 83 53
49 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5308
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2308 2582 3968 1239
Size: 1069 274 1386 2579
Fragments arranged by size:
2579 1386 1069 274
Bpu10I CC'TnA_GC
Cuts at: 2033 2033
Size: 5308
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3433 4298 4596 3433
Size: 865 298 4145
Fragments arranged by size:
4145 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3971 882
Size: 617 2472 2219
Fragments arranged by size:
2472 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2332 3099 493
Size: 711 1128 767 2702
Fragments arranged by size:
2702 1128 767 711
BsaBI GATnn'nnATC
Cuts at: 5302 5302
Size: 5308
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3115 3497 4132 275
Size: 53 83 186 936 1582 382 635 1451
Fragments arranged by size:
1582 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2086 2115 3741 4139 4413 4560 4971 2086
Size: 29 1626 398 274 147 411 2423
Fragments arranged by size:
2423 1626 411 398 274 147 29
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5083
Fragments arranged by size:
5083 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2177 2609 1186
Size: 991 432 3885
Fragments arranged by size:
3885 991 432
BseYI C'CCAG_C
Cuts at: 4511 5007 4511
Size: 496 4812
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4735
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2758 3519 4547 1540
Size: 275 186 757 761 1028 2301
Fragments arranged by size:
2301 1028 761 757 275 186
BsiHKAI G_wGCw'C
Cuts at: 3369 3454 4525 3369
Size: 85 1071 4152
Fragments arranged by size:
4152 1071 85
BsmI GAATG_Cn'
Cuts at: 2505 2819 2912 2505
Size: 314 93 4901
Fragments arranged by size:
4901 314 93
BsmBI CGTCTCn'nnnn_
Cuts at: 2447 2447
Size: 5308
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2094 2627 3369 3454 4525 1391
Size: 399 304 533 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 533 399 304 85
BspEI T'CCGG_A
Cuts at: 4971 4971
Size: 5308
BspHI T'CATG_A
Cuts at: 3197 4927 3197
Size: 1730 3578
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2663 844
Size: 1819 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3195 1394
Size: 429 1372 3507
Fragments arranged by size:
3507 1372 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3803 3977 65
Size: 1183 2555 174 1396
Fragments arranged by size:
2555 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2086 3952 4139 1700
Size: 110 276 1866 187 2869
Fragments arranged by size:
2869 1866 276 187 110
BsrGI T'GTAC_A
Cuts at: 96 2526 96
Size: 2430 2878
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5308
BssSI C'ACGA_G
Cuts at: 2573 3368 4380 2573
Size: 795 1012 3501
Fragments arranged by size:
3501 1012 795
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5308
BstBI TT'CG_AA
Cuts at: 2155 4112 2155
Size: 1957 3351
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5308
BstXI CCAn_nnnn'nTGG
Cuts at: 2332 2332
Size: 5308
BstYI r'GATC_y
Cuts at: 1972 2061 2187 2638 3005 3390 3407 4859 4945
Size: 89 126 451 367 385 17 1452 86
Cuts at: 4945 4957 5303 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 451 385 367 346 126 89
86 17 12
Bsu36I CC'TnA_GG
Cuts at: 2369 2369
Size: 5308
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3817
Fragments arranged by size:
3817 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4569
Fragments arranged by size:
4569 683 56
BtsI GCAGTG_nn'
Cuts at: 2824 3618 3638 2824
Size: 794 20 4494
Fragments arranged by size:
4494 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5308
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5273
DraI TTT'AAA
Cuts at: 2612 2612
Size: 5308
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4315 809
Size: 507 2999 1802
Fragments arranged by size:
2999 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2755 3644 5273
Size: 54 1425 50 275 18 925 889 1629
Cuts at: 5273 8
Size: 43
Fragments arranged by size:
1629 1425 925 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2755 1537
Size: 275 943 4090
Fragments arranged by size:
4090 943 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3238 1353
Size: 1885 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3895 4269 4415 387
Size: 1064 138 2306 374 146 1280
Fragments arranged by size:
2306 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2308 2582 3371 3968 4755 5023 1239
Size: 393 676 274 789 597 787 268 1524
Fragments arranged by size:
1524 789 787 676 597 393 274 268
EcoRI G'AATT_C
Cuts at: 2617 2995 2617
Size: 378 4930
FspI TGC'GCA
Cuts at: 2504 3814 2504
Size: 1310 3998
HaeII r_GCGC'y
Cuts at: 1678 2012 4455 1678
Size: 334 2443 2531
Fragments arranged by size:
2531 2443 334
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2588 2620 3949 3981 4023
Size: 32 135 32 1016 32 1329 32 42
Cuts at: 4023 4055 1373
Size: 32 2626
Fragments arranged by size:
2626 1329 1016 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2652 2898 669
Size: 988 281 714 246 3079
Fragments arranged by size:
3079 988 714 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5308
HpaI GTT'AAC
Cuts at: 2898 2898
Size: 5308
KpnI G_GTAC'C
Cuts at: 2633 2633
Size: 5308
MfeI C'AATT_G
Cuts at: 2907 2907
Size: 5308
MluI A'CGCG_T
Cuts at: 5184 5184
Size: 5308
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4422 4606 1305
Size: 3117 184 2007
Fragments arranged by size:
3117 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3486
Fragments arranged by size:
3486 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3266 3625 3784 518
Size: 648 2100 359 159 2042
Fragments arranged by size:
2100 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2305 2724 3401 4549 4794 1606
Size: 699 419 677 1148 245 2120
Fragments arranged by size:
2120 1148 699 677 419 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3817
Fragments arranged by size:
3817 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5308
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5308
NotI GC'GGCC_GC
Cuts at: 2755 2755
Size: 5308
NspI r_CATG'y
Cuts at: 1132 1229 2392 2666 4211 1132
Size: 97 1163 274 1545 2229
Fragments arranged by size:
2229 1545 1163 274 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5308
PciI A'CATG_T
Cuts at: 4207 4207
Size: 5308
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5308
PmeI GTTT'AAAC
Cuts at: 2612 2612
Size: 5308
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3377 3409 4890 4922 3377
Size: 32 1481 32 3763
Fragments arranged by size:
3763 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5308
PsiI TTA'TAA
Cuts at: 2878 2878
Size: 5308
PstI C_TGCA'G
Cuts at: 830 2660 830
Size: 1830 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5308
SalI G'TCGA_C
Cuts at: 1936 2650 1936
Size: 714 4594
SbfI CC_TGCA'GG
Cuts at: 2660 2660
Size: 5308
ScaI AGT'ACT
Cuts at: 3556 5268 3556
Size: 1712 3596
SfcI C'TryA_G
Cuts at: 826 1045 2656 3791 4472 4663 826
Size: 219 1611 1135 681 191 1471
Fragments arranged by size:
1611 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5308
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5308
SmaI CCC'GGG
Cuts at: 1872 2635 1872
Size: 763 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3412 4313 4575 820
Size: 197 926 1469 901 262 1553
Fragments arranged by size:
1553 1469 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3099 493
Size: 2606 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5308
SphI G_CATG'C
Cuts at: 1132 2666 1132
Size: 1534 3774
SspI AAT'ATT
Cuts at: 5 52 3232 5
Size: 47 3180 2081
Fragments arranged by size:
3180 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5308
StyI C'CwwG_G
Cuts at: 513 1065 2004 2460 2747 513
Size: 552 939 456 287 3074
Fragments arranged by size:
3074 939 552 456 287
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3335 3352 3505 3690 4135 325
Size: 1255 1755 17 153 185 445 1498
Fragments arranged by size:
1755 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2166 2526 3554
Size: 274 80 33 51 1443 189 360 1028
Cuts at: 3554 5266 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1028 360 274 189 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5268 5300 5268
Size: 32 5276
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5308
XbaI T'CTAG_A
Cuts at: 2644 2644
Size: 5308
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2107 2309 2467 2107
Size: 202 158 4948
Fragments arranged by size:
4948 202 158
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5308
XmaI C'CCGG_G
Cuts at: 1870 2633 1870
Size: 763 4545
XmnI GAAnn'nnTTC
Cuts at: 3437 3437
Size: 5308
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3116 276
Size: 53 83 186 936 1582 2468
Fragments arranged by size:
2468 1582 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI
SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BstZ17I DraIII EcoICRI EcoNI
EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI PvuII RsrII SacI SacII SanDI SapI
SexAI SfiI SfoI SrfI SwaI