Restriction map for
pFN21AB6884
(Circular) (Six-base) MAPSORT of: pFN21AB6884.seq Check: 631 from: 1 to: 5308
pFN21AB6884 5308 bp
With 182 enzymes: SgfI *
October 20, 2009 10:41 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2272 2272
Size: 5308
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3118 278
Size: 53 83 186 936 1582 2468
Fragments arranged by size:
2468 1582 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2651 1937
Size: 714 4594
Acc65I G'GTAC_C
Cuts at: 2629 2629
Size: 5308
AclI AA'CG_TT
Cuts at: 1563 3435 3808 1563
Size: 1872 373 3063
Fragments arranged by size:
3063 1872 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2192 2318 2519 3371 4755 5023 1632
Size: 560 126 201 852 1384 268 1917
Fragments arranged by size:
1917 1384 852 560 268 201 126
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5111
AflIII A'CryG_T
Cuts at: 1203 2334 4207 5184 1203
Size: 1131 1873 977 1327
Fragments arranged by size:
1873 1327 1131 977
AgeI A'CCGG_T
Cuts at: 4139 4139
Size: 5308
AhdI GACnn_n'nnGTC
Cuts at: 4037 4037
Size: 5308
AleI CACnn'nnGTG
Cuts at: 1166 2439 1166
Size: 1273 4035
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5308
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2240 2272 2240
Size: 32 5276
AlwNI CAG_nnn'CTG
Cuts at: 2296 3051 4623 2296
Size: 755 1572 2981
Fragments arranged by size:
2981 1572 755
ApaLI G'TGCA_C
Cuts at: 3365 4521 3365
Size: 1156 4152
ApoI r'AATT_y
Cuts at: 1493 2489 2617 2843 2995 5104 1493
Size: 996 128 226 152 2109 1697
Fragments arranged by size:
2109 1697 996 226 152 128
AseI AT'TA_AT
Cuts at: 160 1032 3862 160
Size: 872 2830 1606
Fragments arranged by size:
2830 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5308
AvaI C'yCGr_G
Cuts at: 1870 1943 2243 2633 1870
Size: 73 300 390 4545
Fragments arranged by size:
4545 390 300 73
BamHI G'GATC_C
Cuts at: 2638 3005 2638
Size: 367 4941
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2239 2629 4084 618
Size: 325 217 627 452 390 1455 1842
Fragments arranged by size:
1842 1455 627 452 390 325 217
BanII G_rGCy'C
Cuts at: 1391 2627 1391
Size: 1236 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2257 928
Size: 971 358 3979
Fragments arranged by size:
3979 971 358
BbvCI CC'TCA_GC
Cuts at: 2307 2307
Size: 5308
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3499 3533 1903
Size: 34 1562 34 3678
Fragments arranged by size:
3678 1562 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3200 4410 3200
Size: 1210 4098
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5308
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2564 3919 136
Size: 107 122 71 631 605 892 1355 1525
Fragments arranged by size:
1525 1355 892 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5303 5303
Size: 5308
BlpI GC'TnA_GC
Cuts at: 2725 2725
Size: 5308
Bme1580I G_kGCm'C
Cuts at: 1790 2244 2436 3369 4525 1790
Size: 454 192 933 1156 2573
Fragments arranged by size:
2573 1156 933 454 192
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5308
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3039 3997 442
Size: 416 53 83 399 24 1622 958 1753
Fragments arranged by size:
1753 1622 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5308
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2102 3968 1239
Size: 863 1866 2579
Fragments arranged by size:
2579 1866 863
Bpu10I CC'TnA_GC
Cuts at: 2307 2307
Size: 5308
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3433 4298 4596 3433
Size: 865 298 4145
Fragments arranged by size:
4145 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3971 882
Size: 617 2472 2219
Fragments arranged by size:
2472 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3099 493
Size: 711 1895 2702
Fragments arranged by size:
2702 1895 711
BsaBI GATnn'nnATC
Cuts at: 5302 5302
Size: 5308
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3115 3497 4132 275
Size: 53 83 186 936 1582 382 635 1451
Fragments arranged by size:
1582 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3741 4139 4413 4560 4971 3741
Size: 398 274 147 411 4078
Fragments arranged by size:
4078 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2240 2270 1178
Size: 30 165 30 837 30 4216
Fragments arranged by size:
4216 837 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2090 2099 1186
Size: 904 9 4395
Fragments arranged by size:
4395 904 9
BseYI C'CCAG_C
Cuts at: 4511 5007 4511
Size: 496 4812
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2066 2132 2402 1163
Size: 573 330 66 270 4069
Fragments arranged by size:
4069 573 330 270 66
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2758 3519 4547 1540
Size: 275 186 757 761 1028 2301
Fragments arranged by size:
2301 1028 761 757 275 186
BsiHKAI G_wGCw'C
Cuts at: 3369 3454 4525 3369
Size: 85 1071 4152
Fragments arranged by size:
4152 1071 85
BsmI GAATG_Cn'
Cuts at: 2819 2912 2819
Size: 93 5215
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2244 2436 2627 3369 3454 4525 1391
Size: 399 454 192 191 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 454 399 192 191 85
BspEI T'CCGG_A
Cuts at: 4971 4971
Size: 5308
BspHI T'CATG_A
Cuts at: 3197 4927 3197
Size: 1730 3578
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2272 2663 844
Size: 1428 391 3489
Fragments arranged by size:
3489 1428 391
BsrBI CCG'CTC
Cuts at: 1394 1823 2089 3195 1394
Size: 429 266 1106 3507
Fragments arranged by size:
3507 1106 429 266
BsrDI GCAATG_nn'
Cuts at: 65 1248 3803 3977 65
Size: 1183 2555 174 1396
Fragments arranged by size:
2555 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2230 2567 3952 4139 1700
Size: 110 420 337 1385 187 2869
Fragments arranged by size:
2869 1385 420 337 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5308
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5308
BssSI C'ACGA_G
Cuts at: 3368 4380 3368
Size: 1012 4296
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5308
BstBI TT'CG_AA
Cuts at: 4112 4112
Size: 5308
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5308
BstYI r'GATC_y
Cuts at: 1972 2446 2638 3005 3390 3407 4859 4945 4957
Size: 474 192 367 385 17 1452 86 12
Cuts at: 4957 5303 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 474 385 367 346 192 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2143 2259 2440 513
Size: 552 939 139 116 181 3381
Fragments arranged by size:
3381 939 552 181 139 116
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4569
Fragments arranged by size:
4569 683 56
BtsI GCAGTG_nn'
Cuts at: 2120 2385 2421 2824 3618 3638 2120
Size: 265 36 403 794 20 3790
Fragments arranged by size:
3790 794 403 265 36 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5308
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5273
DraI TTT'AAA
Cuts at: 2612 2612
Size: 5308
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2318 4315 809
Size: 507 1002 1997 1802
Fragments arranged by size:
1997 1802 1002 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2007 2755 3644
Size: 54 1425 50 275 18 177 748 889
Cuts at: 3644 5273 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 748 275 177 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2755 1537
Size: 275 943 4090
Fragments arranged by size:
4090 943 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3238 1353
Size: 1885 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3895 4269 4415 387
Size: 1064 138 2306 374 146 1280
Fragments arranged by size:
2306 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2102 2192 2318 2519 3371 3968 4755
Size: 393 470 90 126 201 852 597 787
Cuts at: 4755 5023 1239
Size: 268 1524
Fragments arranged by size:
1524 852 787 597 470 393 268 201
126 90
EcoO109I rG'GnC_Cy
Cuts at: 2018 2388 2556 2018
Size: 370 168 4770
Fragments arranged by size:
4770 370 168
EcoRI G'AATT_C
Cuts at: 2489 2617 2995 2489
Size: 128 378 4802
Fragments arranged by size:
4802 378 128
FspI TGC'GCA
Cuts at: 3814 3814
Size: 5308
HaeII r_GCGC'y
Cuts at: 1678 2152 4455 1678
Size: 474 2303 2531
Fragments arranged by size:
2531 2303 474
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3949 3981 4023 4055 1373
Size: 32 135 32 2377 32 42 32 2626
Fragments arranged by size:
2626 2377 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2350 2652 2898 669
Size: 988 281 412 302 246 3079
Fragments arranged by size:
3079 988 412 302 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5308
HpaI GTT'AAC
Cuts at: 2898 2898
Size: 5308
KpnI G_GTAC'C
Cuts at: 2633 2633
Size: 5308
MfeI C'AATT_G
Cuts at: 2907 2907
Size: 5308
MluI A'CGCG_T
Cuts at: 5184 5184
Size: 5308
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4422 4606 1305
Size: 3117 184 2007
Fragments arranged by size:
3117 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2009 10
Size: 54 1425 343 177 3309
Fragments arranged by size:
3309 1425 343 177 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2439 3266 3625 3784 518
Size: 648 1273 827 359 159 2042
Fragments arranged by size:
2042 1273 827 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2506 2724 3401 4549 4794 1606
Size: 900 218 677 1148 245 2120
Fragments arranged by size:
2120 1148 900 677 245 218
NaeI GCC'GGC
Cuts at: 2569 2569
Size: 5308
NcoI C'CATG_G
Cuts at: 513 1065 2004 2259 513
Size: 552 939 255 3562
Fragments arranged by size:
3562 939 552 255
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5308
NgoMIV G'CCGG_C
Cuts at: 2567 2567
Size: 5308
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5308
NotI GC'GGCC_GC
Cuts at: 2755 2755
Size: 5308
NspI r_CATG'y
Cuts at: 1132 1229 2338 2525 2666 4211 1132
Size: 97 1109 187 141 1545 2229
Fragments arranged by size:
2229 1545 1109 187 141 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5308
PciI A'CATG_T
Cuts at: 2334 4207 2334
Size: 1873 3435
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2144 1108
Size: 1036 4272
PmeI GTTT'AAAC
Cuts at: 2612 2612
Size: 5308
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2240 2272 3377 3409 4890 4922 2240
Size: 32 1105 32 1481 32 2626
Fragments arranged by size:
2626 1481 1105 32 32 32
PpuMI rG'GwC_Cy
Cuts at: 2018 2388 2018
Size: 370 4938
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5308
PsiI TTA'TAA
Cuts at: 2878 2878
Size: 5308
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2195 2227 2195
Size: 32 5276
PstI C_TGCA'G
Cuts at: 830 2511 2660 830
Size: 1681 149 3478
Fragments arranged by size:
3478 1681 149
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5308
PvuII CAG'CTG
Cuts at: 2506 2506
Size: 5308
SalI G'TCGA_C
Cuts at: 1936 2650 1936
Size: 714 4594
SbfI CC_TGCA'GG
Cuts at: 2660 2660
Size: 5308
ScaI AGT'ACT
Cuts at: 3556 5268 3556
Size: 1712 3596
SfcI C'TryA_G
Cuts at: 826 1045 2507 2656 3791 4472 4663 826
Size: 219 1462 149 1135 681 191 1471
Fragments arranged by size:
1471 1462 1135 681 219 191 149
SfiI GGCCn_nnn'nGGCC
Cuts at: 2564 2564
Size: 5308
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5308
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5308
SmaI CCC'GGG
Cuts at: 1872 2635 1872
Size: 763 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3412 4313 4575 820
Size: 197 926 1469 901 262 1553
Fragments arranged by size:
1553 1469 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3099 493
Size: 2606 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5308
SphI G_CATG'C
Cuts at: 1132 2666 1132
Size: 1534 3774
SspI AAT'ATT
Cuts at: 5 52 3232 5
Size: 47 3180 2081
Fragments arranged by size:
3180 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5308
StyI C'CwwG_G
Cuts at: 513 1065 2004 2259 2747 513
Size: 552 939 255 488 3074
Fragments arranged by size:
3074 939 552 488 255
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3335 3352 3505 3690 4135 325
Size: 1255 1755 17 153 185 445 1498
Fragments arranged by size:
1755 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3554 5266 96
Size: 274 80 33 51 1443 1577 1712 138
Fragments arranged by size:
1712 1577 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5268 5300 5268
Size: 32 5276
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5308
XbaI T'CTAG_A
Cuts at: 2644 2644
Size: 5308
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5308
XmaI C'CCGG_G
Cuts at: 1870 2633 1870
Size: 763 4545
XmnI GAAnn'nnTTC
Cuts at: 3437 3437
Size: 5308
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3116 276
Size: 53 83 186 936 1582 2468
Fragments arranged by size:
2468 1582 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI
BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI
BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI
NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI
PsiI PsrI PstI PvuI PvuII SalI SbfI ScaI
SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI ApaI AscI AvrII BaeI BbeI BfrBI BplI
BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI
EcoRV FalI FseI FspAI KasI NarI NruI NsiI
PacI PfoI PmlI PspOMI PspXI RsrII SacI SacII
SanDI SapI SexAI SfoI SrfI SwaI XcmI