Restriction map for
pFN21AB6778
(Circular) (Six-base) MAPSORT of: pFN21AB6778.seq Check: 3960 from: 1 to: 5161
pFN21AB6778 5161 bp
With 182 enzymes: SgfI *
March 28, 2012 12:55 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2971 278
Size: 53 83 186 936 1435 2468
Fragments arranged by size:
2468 1435 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2504 1937
Size: 567 4594
Acc65I G'GTAC_C
Cuts at: 2482 2482
Size: 5161
AclI AA'CG_TT
Cuts at: 1563 3288 3661 1563
Size: 1725 373 3063
Fragments arranged by size:
3063 1725 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3224 4608 4876 1632
Size: 1592 1384 268 1917
Fragments arranged by size:
1917 1592 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4964
AflIII A'CryG_T
Cuts at: 1203 4060 5037 1203
Size: 2857 977 1327
Fragments arranged by size:
2857 1327 977
AgeI A'CCGG_T
Cuts at: 3992 3992
Size: 5161
AhdI GACnn_n'nnGTC
Cuts at: 3890 3890
Size: 5161
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5161
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5161
AlwNI CAG_nnn'CTG
Cuts at: 2904 4476 2904
Size: 1572 3589
ApaLI G'TGCA_C
Cuts at: 3218 4374 3218
Size: 1156 4005
ApoI r'AATT_y
Cuts at: 1493 2378 2470 2696 2848 4957 1493
Size: 885 92 226 152 2109 1697
Fragments arranged by size:
2109 1697 885 226 152 92
AseI AT'TA_AT
Cuts at: 160 1032 3715 160
Size: 872 2683 1606
Fragments arranged by size:
2683 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5161
AvaI C'yCGr_G
Cuts at: 1870 1943 2486 1870
Size: 73 543 4545
Fragments arranged by size:
4545 543 73
BamHI G'GATC_C
Cuts at: 2491 2858 2491
Size: 367 4794
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2482 3937 618
Size: 325 217 627 695 1455 1842
Fragments arranged by size:
1842 1455 695 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2480 1391
Size: 1089 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2096 2196 928
Size: 971 197 100 3893
Fragments arranged by size:
3893 971 197 100
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3352 3386 1903
Size: 34 1415 34 3678
Fragments arranged by size:
3678 1415 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3053 4263 3053
Size: 1210 3951
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5161
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3772 136
Size: 107 122 71 631 605 2100 1525
Fragments arranged by size:
2100 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5156 5156
Size: 5161
BlpI GC'TnA_GC
Cuts at: 2578 2578
Size: 5161
Bme1580I G_kGCm'C
Cuts at: 1790 3222 4378 1790
Size: 1432 1156 2573
Fragments arranged by size:
2573 1432 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5161
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2892 3850 442
Size: 416 53 83 399 24 1475 958 1753
Fragments arranged by size:
1753 1475 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5161
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2255 3821 1239
Size: 1016 1566 2579
Fragments arranged by size:
2579 1566 1016
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2435 3286 4151 4449 2435
Size: 851 865 298 3147
Fragments arranged by size:
3147 865 851 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3824 882
Size: 617 2325 2219
Fragments arranged by size:
2325 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2952 493
Size: 711 1748 2702
Fragments arranged by size:
2702 1748 711
BsaBI GATnn'nnATC
Cuts at: 5155 5155
Size: 5161
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2968 3350 3985 275
Size: 53 83 186 936 1435 382 635 1451
Fragments arranged by size:
1451 1435 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2382 3594 3992 4266 4413 4824 2382
Size: 1212 398 274 147 411 2719
Fragments arranged by size:
2719 1212 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4936
Fragments arranged by size:
4936 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5161
BseYI C'CCAG_C
Cuts at: 2097 4364 4860 2097
Size: 2267 496 2398
Fragments arranged by size:
2398 2267 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4588
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2331 2611 3372 4400 1540
Size: 275 186 330 280 761 1028 2301
Fragments arranged by size:
2301 1028 761 330 280 275 186
BsiHKAI G_wGCw'C
Cuts at: 3222 3307 4378 3222
Size: 85 1071 4005
Fragments arranged by size:
4005 1071 85
BsmI GAATG_Cn'
Cuts at: 2240 2289 2425 2672 2765 2240
Size: 49 136 247 93 4636
Fragments arranged by size:
4636 247 136 93 49
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2480 3222 3307 4378 1391
Size: 399 690 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 690 399 85
BspEI T'CCGG_A
Cuts at: 2382 4824 2382
Size: 2442 2719
BspHI T'CATG_A
Cuts at: 3050 4780 3050
Size: 1730 3431
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2516 844
Size: 1672 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3048 1394
Size: 429 1225 3507
Fragments arranged by size:
3507 1225 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3656 3830 65
Size: 1183 2408 174 1396
Fragments arranged by size:
2408 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3805 3992 1700
Size: 110 1995 187 2869
Fragments arranged by size:
2869 1995 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5161
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5161
BssSI C'ACGA_G
Cuts at: 3221 4233 3221
Size: 1012 4149
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5161
BstBI TT'CG_AA
Cuts at: 2221 3965 2221
Size: 1744 3417
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5161
BstYI r'GATC_y
Cuts at: 1972 2491 2858 3243 3260 4712 4798 4810 5156
Size: 519 367 385 17 1452 86 12 346
Cuts at: 5156 1972
Size: 1977
Fragments arranged by size:
1977 1452 519 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2325 513
Size: 552 1260 3349
Fragments arranged by size:
3349 1260 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4422
Fragments arranged by size:
4422 683 56
BtsI GCAGTG_nn'
Cuts at: 2677 3471 3491 2677
Size: 794 20 4347
Fragments arranged by size:
4347 794 20
ClaI AT'CG_AT
Cuts at: 1554 2121 1554
Size: 567 4594
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5126
DraI TTT'AAA
Cuts at: 2465 2465
Size: 5161
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4168 809
Size: 507 2852 1802
Fragments arranged by size:
2852 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2322 2328 2608
Size: 54 1425 50 275 18 492 6 280
Cuts at: 2608 3497 5126 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 492 280 275 54 50
43 18 6
EagI C'GGCC_G
Cuts at: 1537 1812 2328 2608 1537
Size: 275 516 280 4090
Fragments arranged by size:
4090 516 280 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3091 1353
Size: 1738 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2036 3748 4122 4268 387
Size: 1064 138 447 1712 374 146 1280
Fragments arranged by size:
1712 1280 1064 447 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2255 3224 3821 4608 4876 1239
Size: 393 623 969 597 787 268 1524
Fragments arranged by size:
1524 969 787 623 597 393 268
EcoRI G'AATT_C
Cuts at: 2378 2470 2848 2378
Size: 92 378 4691
Fragments arranged by size:
4691 378 92
FspI TGC'GCA
Cuts at: 2424 3667 2424
Size: 1243 3918
HaeII r_GCGC'y
Cuts at: 1678 4308 1678
Size: 2630 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2334 2366 2386 2418 3802
Size: 32 135 32 762 32 20 32 1384
Cuts at: 3802 3834 3876 3908 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1384 762 135 42 32 32 32
32 32 32 20
HincII GTy'rAC
Cuts at: 669 1657 1938 2104 2505 2751 669
Size: 988 281 166 401 246 3079
Fragments arranged by size:
3079 988 401 281 246 166
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5161
HpaI GTT'AAC
Cuts at: 2104 2751 2104
Size: 647 4514
KpnI G_GTAC'C
Cuts at: 2486 2486
Size: 5161
MfeI C'AATT_G
Cuts at: 2280 2760 2280
Size: 480 4681
MluI A'CGCG_T
Cuts at: 5037 5037
Size: 5161
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2059 4275 4459 1305
Size: 754 2216 184 2007
Fragments arranged by size:
2216 2007 754 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2324 10
Size: 54 1425 343 492 2847
Fragments arranged by size:
2847 1425 492 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2204 3119 3478 3637 518
Size: 648 1038 915 359 159 2042
Fragments arranged by size:
2042 1038 915 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2577 3254 4402 4647 1606
Size: 971 677 1148 245 2120
Fragments arranged by size:
2120 1148 971 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4609
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5161
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5161
NotI GC'GGCC_GC
Cuts at: 2608 2608
Size: 5161
NruI TCG'CGA
Cuts at: 2453 2453
Size: 5161
NspI r_CATG'y
Cuts at: 1132 1229 2519 4064 1132
Size: 97 1290 1545 2229
Fragments arranged by size:
2229 1545 1290 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5161
PciI A'CATG_T
Cuts at: 4060 4060
Size: 5161
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2041 1108
Size: 933 4228
PmeI GTTT'AAAC
Cuts at: 2465 2465
Size: 5161
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3230 3262 4743 4775 3230
Size: 32 1481 32 3616
Fragments arranged by size:
3616 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5161
PsiI TTA'TAA
Cuts at: 2132 2731 2132
Size: 599 4562
PstI C_TGCA'G
Cuts at: 830 2513 830
Size: 1683 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5161
SalI G'TCGA_C
Cuts at: 1936 2503 1936
Size: 567 4594
SbfI CC_TGCA'GG
Cuts at: 2513 2513
Size: 5161
ScaI AGT'ACT
Cuts at: 3409 5121 3409
Size: 1712 3449
SfcI C'TryA_G
Cuts at: 826 1045 2509 3644 4325 4516 826
Size: 219 1464 1135 681 191 1471
Fragments arranged by size:
1471 1464 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5161
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5161
SmaI CCC'GGG
Cuts at: 1872 2488 1872
Size: 616 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2414 3265 4166 4428 820
Size: 197 926 471 851 901 262 1553
Fragments arranged by size:
1553 926 901 851 471 262 197
SnaBI TAC'GTA
Cuts at: 493 2952 493
Size: 2459 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5161
SphI G_CATG'C
Cuts at: 1132 2519 1132
Size: 1387 3774
SspI AAT'ATT
Cuts at: 5 52 3085 5
Size: 47 3033 2081
Fragments arranged by size:
3033 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5161
StyI C'CwwG_G
Cuts at: 513 1065 2600 513
Size: 552 1535 3074
Fragments arranged by size:
3074 1535 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2350 3188 3205 3358 3543 3988 325
Size: 1255 770 838 17 153 185 445 1498
Fragments arranged by size:
1498 1255 838 770 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3407 5119 96
Size: 274 80 33 51 1443 1430 1712 138
Fragments arranged by size:
1712 1443 1430 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2329 2361 5121 5153 2329
Size: 32 2760 32 2337
Fragments arranged by size:
2760 2337 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5161
XbaI T'CTAG_A
Cuts at: 2497 2497
Size: 5161
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5161
XmaI C'CCGG_G
Cuts at: 1870 2486 1870
Size: 616 4545
XmnI GAAnn'nnTTC
Cuts at: 2378 3290 2378
Size: 912 4249
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2969 276
Size: 53 83 186 936 1435 2468
Fragments arranged by size:
2468 1435 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI
FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI
MluI MmeI MscI MslI MspA1I NcoI NdeI NheI
NotI NruI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI
FspAI KasI NaeI NarI NgoMIV NsiI PacI PfoI
PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI