(Circular) (Six-base) MAPSORT of: pFN21AB6448.seq Check: 9340 from: 1 to: 5752 pFN21AB6448 5752 bp With 182 enzymes: SgfI * October 20, 2009 10:39 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2602 2602 Size: 5752 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3562 278 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3095 1937 Size: 1158 4594 Acc65I G'GTAC_C Cuts at: 3073 3073 Size: 5752 AclI AA'CG_TT Cuts at: 1563 3051 3879 4252 1563 Size: 1488 828 373 3063 Fragments arranged by size: 3063 1488 828 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3815 5199 5467 1632 Size: 2183 1384 268 1917 Fragments arranged by size: 2183 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5555 AflIII A'CryG_T Cuts at: 1203 4651 5628 1203 Size: 3448 977 1327 Fragments arranged by size: 3448 1327 977 AgeI A'CCGG_T Cuts at: 4583 4583 Size: 5752 AhdI GACnn_n'nnGTC Cuts at: 4481 4481 Size: 5752 AleI CACnn'nnGTG Cuts at: 1166 2709 1166 Size: 1543 4209 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5752 AlwNI CAG_nnn'CTG Cuts at: 3495 5067 3495 Size: 1572 4180 ApaI G_GGCC'C Cuts at: 3018 3018 Size: 5752 ApaLI G'TGCA_C Cuts at: 3809 4965 3809 Size: 1156 4596 ApoI r'AATT_y Cuts at: 1493 2375 3061 3287 3439 5548 1493 Size: 882 686 226 152 2109 1697 Fragments arranged by size: 2109 1697 882 686 226 152 AseI AT'TA_AT Cuts at: 160 1032 2514 4306 160 Size: 872 1482 1792 1606 Fragments arranged by size: 1792 1606 1482 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 AvaI C'yCGr_G Cuts at: 1870 1943 2052 2154 3077 1870 Size: 73 109 102 923 4545 Fragments arranged by size: 4545 923 109 102 73 BamHI G'GATC_C Cuts at: 3082 3449 3082 Size: 367 5385 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3073 4528 618 Size: 325 217 627 1286 1455 1842 Fragments arranged by size: 1842 1455 1286 627 325 217 BanII G_rGCy'C Cuts at: 1391 2052 2071 2905 3018 3071 1391 Size: 661 19 834 113 53 4072 Fragments arranged by size: 4072 834 661 113 53 19 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4781 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3943 3977 1903 Size: 34 2006 34 3678 Fragments arranged by size: 3678 2006 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2226 3644 4854 2226 Size: 1418 1210 3124 Fragments arranged by size: 3124 1418 1210 BclI T'GATC_A Cuts at: 1548 3033 1548 Size: 1485 4267 BfrBI ATG'CAT Cuts at: 2652 2652 Size: 5752 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2009 4363 136 Size: 107 122 71 631 605 337 2354 1525 Fragments arranged by size: 2354 1525 631 605 337 122 107 71 BglII A'GATC_T Cuts at: 5747 5747 Size: 5752 BlpI GC'TnA_GC Cuts at: 3169 3169 Size: 5752 Bme1580I G_kGCm'C Cuts at: 1790 3018 3813 4969 1790 Size: 1228 795 1156 2573 Fragments arranged by size: 2573 1228 1156 795 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5752 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2089 3483 4441 Size: 416 53 83 399 24 672 1394 958 Cuts at: 4441 442 Size: 1753 Fragments arranged by size: 1753 1394 958 672 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5752 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2064 2085 4412 1239 Size: 825 21 2327 2579 Fragments arranged by size: 2579 2327 825 21 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3877 4742 5040 3877 Size: 865 298 4589 Fragments arranged by size: 4589 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4415 882 Size: 617 2916 2219 Fragments arranged by size: 2916 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3543 493 Size: 711 2339 2702 Fragments arranged by size: 2702 2339 711 BsaBI GATnn'nnATC Cuts at: 2873 5746 2873 Size: 2873 2879 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3559 3941 4576 275 Size: 53 83 186 936 2026 382 635 1451 Fragments arranged by size: 2026 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2665 4185 4583 4857 5004 5415 2665 Size: 1520 398 274 147 411 3002 Fragments arranged by size: 3002 1520 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5527 Fragments arranged by size: 5527 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2072 2177 2195 2433 1186 Size: 886 105 18 238 4505 Fragments arranged by size: 4505 886 238 105 18 BseYI C'CCAG_C Cuts at: 2538 4955 5451 2538 Size: 2417 496 2839 Fragments arranged by size: 2839 2417 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5179 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3202 3963 4991 1540 Size: 275 186 1201 761 1028 2301 Fragments arranged by size: 2301 1201 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3813 3898 4969 3813 Size: 85 1071 4596 Fragments arranged by size: 4596 1071 85 BsmI GAATG_Cn' Cuts at: 3263 3356 3263 Size: 93 5659 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2052 2071 2905 3018 3071 3813 3898 Size: 399 262 19 834 113 53 742 85 Cuts at: 3898 4969 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 834 742 399 262 113 85 53 19 BspEI T'CCGG_A Cuts at: 2665 5415 2665 Size: 2750 3002 BspHI T'CATG_A Cuts at: 2380 3641 5371 2380 Size: 1261 1730 2761 Fragments arranged by size: 2761 1730 1261 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2253 2568 2602 3107 844 Size: 1409 315 34 505 3489 Fragments arranged by size: 3489 1409 505 315 34 BsrBI CCG'CTC Cuts at: 1394 1823 3639 1394 Size: 429 1816 3507 Fragments arranged by size: 3507 1816 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2269 4247 4421 65 Size: 1183 1021 1978 174 1396 Fragments arranged by size: 1978 1396 1183 1021 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4396 4583 1700 Size: 110 2586 187 2869 Fragments arranged by size: 2869 2586 187 110 BsrGI T'GTAC_A Cuts at: 96 2280 96 Size: 2184 3568 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5752 BssSI C'ACGA_G Cuts at: 3812 4824 3812 Size: 1012 4740 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5752 BstBI TT'CG_AA Cuts at: 4556 4556 Size: 5752 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5752 BstXI CCAn_nnnn'nTGG Cuts at: 2832 2832 Size: 5752 BstYI r'GATC_y Cuts at: 1972 3082 3449 3834 3851 5303 5389 5401 5747 Size: 1110 367 385 17 1452 86 12 346 Cuts at: 5747 1972 Size: 1977 Fragments arranged by size: 1977 1452 1110 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4261 Fragments arranged by size: 4261 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5013 Fragments arranged by size: 5013 683 56 BtsI GCAGTG_nn' Cuts at: 3268 4062 4082 3268 Size: 794 20 4938 Fragments arranged by size: 4938 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5752 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5717 DraI TTT'AAA Cuts at: 3056 3056 Size: 5752 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4759 809 Size: 507 3443 1802 Fragments arranged by size: 3443 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2328 2952 3199 Size: 54 1425 50 275 18 498 624 247 Cuts at: 3199 4088 5717 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 624 498 275 247 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3199 1537 Size: 275 1387 4090 Fragments arranged by size: 4090 1387 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2421 3682 1353 Size: 1068 1261 3423 Fragments arranged by size: 3423 1261 1068 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2036 4339 4713 4859 387 Size: 1064 138 447 2303 374 146 1280 Fragments arranged by size: 2303 1280 1064 447 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2064 2085 3815 4412 5199 5467 1239 Size: 393 432 21 1730 597 787 268 1524 Fragments arranged by size: 1730 1524 787 597 432 393 268 21 EcoO109I rG'GnC_Cy Cuts at: 2233 3014 3015 2233 Size: 781 1 4970 Fragments arranged by size: 4970 781 1 EcoRI G'AATT_C Cuts at: 3061 3439 3061 Size: 378 5374 FspI TGC'GCA Cuts at: 2102 4258 2102 Size: 2156 3596 HaeII r_GCGC'y Cuts at: 1678 4899 1678 Size: 3221 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2422 2454 2581 2613 4393 Size: 32 135 32 850 32 127 32 1780 Cuts at: 4393 4425 4467 4499 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1780 850 135 127 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3096 3342 669 Size: 988 281 1158 246 3079 Fragments arranged by size: 3079 1158 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5752 HpaI GTT'AAC Cuts at: 3342 3342 Size: 5752 KpnI G_GTAC'C Cuts at: 3077 3077 Size: 5752 MfeI C'AATT_G Cuts at: 3351 3351 Size: 5752 MluI A'CGCG_T Cuts at: 5628 5628 Size: 5752 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2382 4866 5050 1305 Size: 1077 2484 184 2007 Fragments arranged by size: 2484 2007 1077 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2330 2954 10 Size: 54 1425 343 498 624 2808 Fragments arranged by size: 2808 1425 624 498 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2573 2604 2709 2825 2879 3710 4069 Size: 648 1407 31 105 116 54 831 359 Cuts at: 4069 4228 518 Size: 159 2042 Fragments arranged by size: 2042 1407 831 648 359 159 116 105 54 31 MspA1I CmG'CkG Cuts at: 1606 2018 3168 3845 4993 5238 1606 Size: 412 1150 677 1148 245 2120 Fragments arranged by size: 2120 1150 1148 677 412 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4261 Fragments arranged by size: 4261 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5752 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5752 NotI GC'GGCC_GC Cuts at: 3199 3199 Size: 5752 NsiI A_TGCA'T Cuts at: 2654 2654 Size: 5752 NspI r_CATG'y Cuts at: 1132 1229 3110 4655 1132 Size: 97 1881 1545 2229 Fragments arranged by size: 2229 1881 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5752 PciI A'CATG_T Cuts at: 4651 4651 Size: 5752 PflMI CCAn_nnn'nTGG Cuts at: 1108 2776 1108 Size: 1668 4084 PmeI GTTT'AAAC Cuts at: 3056 3056 Size: 5752 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3821 3853 5334 5366 3821 Size: 32 1481 32 4207 Fragments arranged by size: 4207 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2233 2233 Size: 5752 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5752 PsiI TTA'TAA Cuts at: 3322 3322 Size: 5752 PspOMI G'GGCC_C Cuts at: 3014 3014 Size: 5752 PstI C_TGCA'G Cuts at: 830 2403 2445 3104 830 Size: 1573 42 659 3478 Fragments arranged by size: 3478 1573 659 42 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5752 SalI G'TCGA_C Cuts at: 1936 3094 1936 Size: 1158 4594 SbfI CC_TGCA'GG Cuts at: 3104 3104 Size: 5752 ScaI AGT'ACT Cuts at: 4000 5712 4000 Size: 1712 4040 SfcI C'TryA_G Cuts at: 826 1045 2399 2441 3100 4235 4916 5107 826 Size: 219 1354 42 659 1135 681 191 1471 Fragments arranged by size: 1471 1354 1135 681 659 219 191 42 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5752 SmaI CCC'GGG Cuts at: 1872 2054 2156 3079 1872 Size: 182 102 923 4545 Fragments arranged by size: 4545 923 182 102 SmlI C'TyrA_G Cuts at: 820 1017 1943 3856 4757 5019 820 Size: 197 926 1913 901 262 1553 Fragments arranged by size: 1913 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3543 493 Size: 3050 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5752 SphI G_CATG'C Cuts at: 1132 3110 1132 Size: 1978 3774 SspI AAT'ATT Cuts at: 5 52 2257 3676 5 Size: 47 2205 1419 2081 Fragments arranged by size: 2205 2081 1419 47 StuI AGG'CCT Cuts at: 1517 2990 1517 Size: 1473 4279 StyI C'CwwG_G Cuts at: 513 1065 2004 2991 3191 513 Size: 552 939 987 200 3074 Fragments arranged by size: 3074 987 939 552 200 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2213 2309 2721 3779 3796 3949 4134 Size: 1255 633 96 412 1058 17 153 185 Cuts at: 4134 4579 325 Size: 445 1498 Fragments arranged by size: 1498 1255 1058 633 445 412 185 153 96 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2280 2307 2829 Size: 274 80 33 51 1443 303 27 522 Cuts at: 2829 3998 5710 96 Size: 1169 1712 138 Fragments arranged by size: 1712 1443 1169 522 303 274 138 80 51 33 27 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5712 5744 5712 Size: 32 5720 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5752 XbaI T'CTAG_A Cuts at: 3088 3088 Size: 5752 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2777 2832 2777 Size: 55 5697 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5752 XmaI C'CCGG_G Cuts at: 1870 2052 2154 3077 1870 Size: 182 102 923 4545 Fragments arranged by size: 4545 923 182 102 XmnI GAAnn'nnTTC Cuts at: 3881 3881 Size: 5752 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3560 276 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI