Restriction map for
pFN21AB6367
(Circular) (Six-base) MAPSORT of: pFN21AB6367.seq Check: 237 from: 1 to: 5512
pFN21AB6367 5512 bp
With 182 enzymes: SgfI *
October 20, 2009 10:40 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3322 278
Size: 53 83 186 936 1786 2468
Fragments arranged by size:
2468 1786 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2855 1937
Size: 918 4594
Acc65I G'GTAC_C
Cuts at: 2833 2833
Size: 5512
AclI AA'CG_TT
Cuts at: 1563 3639 4012 1563
Size: 2076 373 3063
Fragments arranged by size:
3063 2076 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2170 3575 4959 5227 1632
Size: 538 1405 1384 268 1917
Fragments arranged by size:
1917 1405 1384 538 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5315
AflIII A'CryG_T
Cuts at: 1203 4411 5388 1203
Size: 3208 977 1327
Fragments arranged by size:
3208 1327 977
AgeI A'CCGG_T
Cuts at: 4343 4343
Size: 5512
AhdI GACnn_n'nnGTC
Cuts at: 4241 4241
Size: 5512
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5512
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5512
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2054 2086 2054
Size: 32 5480
AlwNI CAG_nnn'CTG
Cuts at: 2119 3255 4827 2119
Size: 1136 1572 2804
Fragments arranged by size:
2804 1572 1136
ApaLI G'TGCA_C
Cuts at: 2345 3569 4725 2345
Size: 1224 1156 3132
Fragments arranged by size:
3132 1224 1156
ApoI r'AATT_y
Cuts at: 1493 2684 2821 3047 3199 5308 1493
Size: 1191 137 226 152 2109 1697
Fragments arranged by size:
2109 1697 1191 226 152 137
AseI AT'TA_AT
Cuts at: 160 1032 4066 160
Size: 872 3034 1606
Fragments arranged by size:
3034 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5512
AvaI C'yCGr_G
Cuts at: 1870 1943 2837 1870
Size: 73 894 4545
Fragments arranged by size:
4545 894 73
BamHI G'GATC_C
Cuts at: 2842 3209 2842
Size: 367 5145
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2833 4288 618
Size: 325 217 627 1046 1455 1842
Fragments arranged by size:
1842 1455 1046 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2025 2831 1391
Size: 634 806 4072
Fragments arranged by size:
4072 806 634
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2644 2740 2799 928
Size: 971 745 96 59 3641
Fragments arranged by size:
3641 971 745 96 59
BbvCI CC'TCA_GC
Cuts at: 2225 2225
Size: 5512
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3703 3737 1903
Size: 34 1766 34 3678
Fragments arranged by size:
3678 1766 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3404 4614 3404
Size: 1210 4302
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5512
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4123 136
Size: 107 122 71 631 605 2451 1525
Fragments arranged by size:
2451 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5507 5507
Size: 5512
BlpI GC'TnA_GC
Cuts at: 2929 2929
Size: 5512
Bme1580I G_kGCm'C
Cuts at: 1790 2349 3573 4729 1790
Size: 559 1224 1156 2573
Fragments arranged by size:
2573 1224 1156 559
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5512
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2692 3243 4201
Size: 416 53 83 399 24 1275 551 958
Cuts at: 4201 442
Size: 1753
Fragments arranged by size:
1753 1275 958 551 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5512
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2429 2618 4172 1239
Size: 1190 189 1554 2579
Fragments arranged by size:
2579 1554 1190 189
Bpu10I CC'TnA_GC
Cuts at: 2019 2225 2273 2019
Size: 206 48 5258
Fragments arranged by size:
5258 206 48
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2522 2712 3637 4502 4800 2522
Size: 190 925 865 298 3234
Fragments arranged by size:
3234 925 865 298 190
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4175 882
Size: 617 2676 2219
Fragments arranged by size:
2676 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3303 493
Size: 711 2099 2702
Fragments arranged by size:
2702 2099 711
BsaBI GATnn'nnATC
Cuts at: 2666 5506 2666
Size: 2840 2672
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3319 3701 4336 275
Size: 53 83 186 936 1786 382 635 1451
Fragments arranged by size:
1786 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3945 4343 4617 4764 5175 3945
Size: 398 274 147 411 4282
Fragments arranged by size:
4282 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5287
Fragments arranged by size:
5287 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5512
BseYI C'CCAG_C
Cuts at: 4715 5211 4715
Size: 496 5016
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2359 1163
Size: 573 623 4316
Fragments arranged by size:
4316 623 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2962 3723 4751 1540
Size: 275 186 961 761 1028 2301
Fragments arranged by size:
2301 1028 961 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2025 2108 2279 2349 3573 3658 4729 2025
Size: 83 171 70 1224 85 1071 2808
Fragments arranged by size:
2808 1224 1071 171 85 83 70
BsmI GAATG_Cn'
Cuts at: 3023 3116 3023
Size: 93 5419
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2025 2108 2279 2349 2831 3573 3658
Size: 399 235 83 171 70 482 742 85
Cuts at: 3658 4729 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 482 399 235 171 85
83 70
BspEI T'CCGG_A
Cuts at: 5175 5175
Size: 5512
BspHI T'CATG_A
Cuts at: 3401 5131 3401
Size: 1730 3782
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2867 844
Size: 2023 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3399 1394
Size: 429 1576 3507
Fragments arranged by size:
3507 1576 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2062 4007 4181 65
Size: 1183 814 1945 174 1396
Fragments arranged by size:
1945 1396 1183 814 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4156 4343 1700
Size: 110 2346 187 2869
Fragments arranged by size:
2869 2346 187 110
BsrGI T'GTAC_A
Cuts at: 96 2491 96
Size: 2395 3117
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5512
BssSI C'ACGA_G
Cuts at: 3572 4584 3572
Size: 1012 4500
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5512
BstBI TT'CG_AA
Cuts at: 4316 4316
Size: 5512
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5512
BstYI r'GATC_y
Cuts at: 1972 2608 2842 3209 3594 3611 5063 5149 5161
Size: 636 234 367 385 17 1452 86 12
Cuts at: 5161 5507 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 636 385 367 346 234 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2214 513
Size: 552 939 210 3811
Fragments arranged by size:
3811 939 552 210
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4773
Fragments arranged by size:
4773 683 56
BtsI GCAGTG_nn'
Cuts at: 3028 3822 3842 3028
Size: 794 20 4698
Fragments arranged by size:
4698 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5512
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5477
DraI TTT'AAA
Cuts at: 2816 2816
Size: 5512
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4519 809
Size: 507 3203 1802
Fragments arranged by size:
3203 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2211 2770 2959
Size: 54 1425 50 275 18 381 559 189
Cuts at: 2959 3848 5477 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 559 381 275 189 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2959 1537
Size: 275 1147 4090
Fragments arranged by size:
4090 1147 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3442 1353
Size: 2089 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4099 4473 4619 387
Size: 1064 138 2510 374 146 1280
Fragments arranged by size:
2510 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2023 2023
Size: 5512
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2170 2429 2618 3575 4172 4959 5227
Size: 393 538 259 189 957 597 787 268
Cuts at: 5227 1239
Size: 1524
Fragments arranged by size:
1524 957 787 597 538 393 268 259
189
EcoO109I rG'GnC_Cy
Cuts at: 2116 2116
Size: 5512
EcoRI G'AATT_C
Cuts at: 2821 3199 2821
Size: 378 5134
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2125 2125
Size: 5512
FspI TGC'GCA
Cuts at: 4018 4018
Size: 5512
HaeII r_GCGC'y
Cuts at: 1678 4659 1678
Size: 2981 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2401 2433 2593 2625 4153
Size: 32 135 32 829 32 160 32 1528
Cuts at: 4153 4185 4227 4259 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1528 829 160 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2856 3102 669
Size: 988 281 918 246 3079
Fragments arranged by size:
3079 988 918 281 246
HindIII A'AGCT_T
Cuts at: 748 2401 748
Size: 1653 3859
HpaI GTT'AAC
Cuts at: 3102 3102
Size: 5512
KpnI G_GTAC'C
Cuts at: 2837 2837
Size: 5512
MfeI C'AATT_G
Cuts at: 3111 3111
Size: 5512
MluI A'CGCG_T
Cuts at: 5388 5388
Size: 5512
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2187 4626 4810 1305
Size: 882 2439 184 2007
Fragments arranged by size:
2439 2007 882 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2213 10
Size: 54 1425 343 381 3309
Fragments arranged by size:
3309 1425 381 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3470 3829 3988 518
Size: 648 2304 359 159 2042
Fragments arranged by size:
2304 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2596 2928 3605 4753 4998 1606
Size: 990 332 677 1148 245 2120
Fragments arranged by size:
2120 1148 990 677 332 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2214 513
Size: 552 939 210 3811
Fragments arranged by size:
3811 939 552 210
NdeI CA'TA_TG
Cuts at: 387 2422 387
Size: 2035 3477
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5512
NotI GC'GGCC_GC
Cuts at: 2959 2959
Size: 5512
NspI r_CATG'y
Cuts at: 1132 1229 2743 2870 4415 1132
Size: 97 1514 127 1545 2229
Fragments arranged by size:
2229 1545 1514 127 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5512
PciI A'CATG_T
Cuts at: 4411 4411
Size: 5512
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2119 1108
Size: 1011 4501
PfoI T'CCnGG_A
Cuts at: 2112 2259 2382 2112
Size: 147 123 5242
Fragments arranged by size:
5242 147 123
PmeI GTTT'AAAC
Cuts at: 2816 2816
Size: 5512
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3581 3613 5094 5126 3581
Size: 32 1481 32 3967
Fragments arranged by size:
3967 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2116 2116
Size: 5512
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5512
PsiI TTA'TAA
Cuts at: 3082 3082
Size: 5512
PstI C_TGCA'G
Cuts at: 830 2864 830
Size: 2034 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5512
PvuII CAG'CTG
Cuts at: 2596 2596
Size: 5512
SacI G_AGCT'C
Cuts at: 2025 2025
Size: 5512
SalI G'TCGA_C
Cuts at: 1936 2854 1936
Size: 918 4594
SbfI CC_TGCA'GG
Cuts at: 2864 2864
Size: 5512
ScaI AGT'ACT
Cuts at: 3760 5472 3760
Size: 1712 3800
SfcI C'TryA_G
Cuts at: 826 1045 2173 2591 2860 3995 4676 4867 826
Size: 219 1128 418 269 1135 681 191 1471
Fragments arranged by size:
1471 1135 1128 681 418 269 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5512
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5512
SmaI CCC'GGG
Cuts at: 1872 2839 1872
Size: 967 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2537 2727 3616 4517 4779 820
Size: 197 926 594 190 889 901 262 1553
Fragments arranged by size:
1553 926 901 889 594 262 197 190
SnaBI TAC'GTA
Cuts at: 493 3303 493
Size: 2810 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5512
SphI G_CATG'C
Cuts at: 1132 2870 1132
Size: 1738 3774
SspI AAT'ATT
Cuts at: 5 52 3436 5
Size: 47 3384 2081
Fragments arranged by size:
3384 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5512
StyI C'CwwG_G
Cuts at: 513 1065 2004 2214 2529 2951 513
Size: 552 939 210 315 422 3074
Fragments arranged by size:
3074 939 552 422 315 210
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3539 3556 3709 3894 4339 325
Size: 1255 1959 17 153 185 445 1498
Fragments arranged by size:
1959 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2491 3758 5470
Size: 274 80 33 51 1443 514 1267 1712
Cuts at: 5470 96
Size: 138
Fragments arranged by size:
1712 1443 1267 514 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2241 2269 2273 2301 5472 5504 2241
Size: 28 4 28 3171 32 2249
Fragments arranged by size:
3171 2249 32 28 28 4
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5512
XbaI T'CTAG_A
Cuts at: 2848 2848
Size: 5512
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2035 2593 2035
Size: 558 4954
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5512
XmaI C'CCGG_G
Cuts at: 1870 2837 1870
Size: 967 4545
XmnI GAAnn'nnTTC
Cuts at: 3641 3641
Size: 5512
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3320 276
Size: 53 83 186 936 1786 2468
Fragments arranged by size:
2468 1786 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI
PsiI PstI PvuI PvuII SacI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI ApaI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI
EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI