Restriction map for
pFN21AB6335
(Circular) (Six-base) MAPSORT of: pFN21AB6335.seq Check: 1402 from: 1 to: 5488
pFN21AB6335 5488 bp
With 182 enzymes: SgfI *
October 20, 2009 10:40 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3298 278
Size: 53 83 186 936 1762 2468
Fragments arranged by size:
2468 1762 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2831 1937
Size: 894 4594
Acc65I G'GTAC_C
Cuts at: 2634 2809 2634
Size: 175 5313
AclI AA'CG_TT
Cuts at: 1563 3615 3988 1563
Size: 2052 373 3063
Fragments arranged by size:
3063 2052 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3551 4935 5203 1632
Size: 1919 1384 268 1917
Fragments arranged by size:
1919 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5291
AflIII A'CryG_T
Cuts at: 1203 4387 5364 1203
Size: 3184 977 1327
Fragments arranged by size:
3184 1327 977
AgeI A'CCGG_T
Cuts at: 4319 4319
Size: 5488
AhdI GACnn_n'nnGTC
Cuts at: 4217 4217
Size: 5488
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5488
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2461 1184
Size: 1277 4211
AlwNI CAG_nnn'CTG
Cuts at: 3231 4803 3231
Size: 1572 3916
ApaLI G'TGCA_C
Cuts at: 3545 4701 3545
Size: 1156 4332
ApoI r'AATT_y
Cuts at: 1493 2385 2432 2507 2797 3023 3175 5284 1493
Size: 892 47 75 290 226 152 2109 1697
Fragments arranged by size:
2109 1697 892 290 226 152 75 47
AscI GG'CGCG_CC
Cuts at: 2015 2015
Size: 5488
AseI AT'TA_AT
Cuts at: 160 1032 4042 160
Size: 872 3010 1606
Fragments arranged by size:
3010 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5488
AvaI C'yCGr_G
Cuts at: 1870 1943 2813 1870
Size: 73 870 4545
Fragments arranged by size:
4545 870 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2618 2651 2618
Size: 33 5455
BamHI G'GATC_C
Cuts at: 2818 3185 2818
Size: 367 5121
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2634 2809 4264 618
Size: 325 217 627 847 175 1455 1842
Fragments arranged by size:
1842 1455 847 627 325 217 175
BanII G_rGCy'C
Cuts at: 1391 2033 2807 1391
Size: 642 774 4072
Fragments arranged by size:
4072 774 642
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4517
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3679 3713 1903
Size: 34 1742 34 3678
Fragments arranged by size:
3678 1742 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2287 3380 4590 2287
Size: 1093 1210 3185
Fragments arranged by size:
3185 1210 1093
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5488
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4099 136
Size: 107 122 71 631 605 2427 1525
Fragments arranged by size:
2427 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2452 5483 2452
Size: 3031 2457
BlpI GC'TnA_GC
Cuts at: 2905 2905
Size: 5488
Bme1580I G_kGCm'C
Cuts at: 1790 3549 4705 1790
Size: 1759 1156 2573
Fragments arranged by size:
2573 1759 1156
BmgBI CAC'GTC
Cuts at: 1318 2137 1318
Size: 819 4669
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3219 4177 442
Size: 416 53 83 399 24 1802 958 1753
Fragments arranged by size:
1802 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5488
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2083 4148 1239
Size: 844 2065 2579
Fragments arranged by size:
2579 2065 844
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2024 2045 3613 4478 4776 2024
Size: 21 1568 865 298 2736
Fragments arranged by size:
2736 1568 865 298 21
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4151 882
Size: 617 2652 2219
Fragments arranged by size:
2652 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2441 3279 493
Size: 711 1237 838 2702
Fragments arranged by size:
2702 1237 838 711
BsaBI GATnn'nnATC
Cuts at: 5482 5482
Size: 5488
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3295 3677 4312 275
Size: 53 83 186 936 1762 382 635 1451
Fragments arranged by size:
1762 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3921 4319 4593 4740 5151 3921
Size: 398 274 147 411 4258
Fragments arranged by size:
4258 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2460 2490 1178
Size: 30 165 30 1057 30 4176
Fragments arranged by size:
4176 1057 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2591 1186
Size: 1405 4083
BseYI C'CCAG_C
Cuts at: 2085 4691 5187 2085
Size: 2606 496 2386
Fragments arranged by size:
2606 2386 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2168 1163
Size: 573 432 4483
Fragments arranged by size:
4483 573 432
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2194 2938 3699 4727 1540
Size: 275 186 193 744 761 1028 2301
Fragments arranged by size:
2301 1028 761 744 275 193 186
BsiHKAI G_wGCw'C
Cuts at: 3549 3634 4705 3549
Size: 85 1071 4332
Fragments arranged by size:
4332 1071 85
BsmI GAATG_Cn'
Cuts at: 2999 3092 2999
Size: 93 5395
BsmBI CGTCTCn'nnnn_
Cuts at: 2143 2143
Size: 5488
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2033 2807 3549 3634 4705 1391
Size: 399 243 774 742 85 1071 2174
Fragments arranged by size:
2174 1071 774 742 399 243 85
BspEI T'CCGG_A
Cuts at: 5151 5151
Size: 5488
BspHI T'CATG_A
Cuts at: 3377 5107 3377
Size: 1730 3758
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2121 2843 844
Size: 1277 722 3489
Fragments arranged by size:
3489 1277 722
BsrBI CCG'CTC
Cuts at: 1394 1823 3375 1394
Size: 429 1552 3507
Fragments arranged by size:
3507 1552 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2260 3983 4157 65
Size: 1183 1012 1723 174 1396
Fragments arranged by size:
1723 1396 1183 1012 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2249 4132 4319 1700
Size: 110 439 1883 187 2869
Fragments arranged by size:
2869 1883 439 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5488
BssHII G'CGCG_C
Cuts at: 1925 2015 1925
Size: 90 5398
BssSI C'ACGA_G
Cuts at: 3548 4560 3548
Size: 1012 4476
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5488
BstBI TT'CG_AA
Cuts at: 4292 4292
Size: 5488
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5488
BstYI r'GATC_y
Cuts at: 1972 2452 2783 2818 3185 3570 3587 5039 5125
Size: 480 331 35 367 385 17 1452 86
Cuts at: 5125 5137 5483 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 480 385 367 346 331 86
35 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2205 513
Size: 552 1140 3796
Fragments arranged by size:
3796 1140 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4749
Fragments arranged by size:
4749 683 56
BtsI GCAGTG_nn'
Cuts at: 3004 3798 3818 3004
Size: 794 20 4674
Fragments arranged by size:
4674 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5488
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5453
DraI TTT'AAA
Cuts at: 2792 2792
Size: 5488
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4495 809
Size: 507 3179 1802
Fragments arranged by size:
3179 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2202 2935 3824
Size: 54 1425 50 275 18 372 733 889
Cuts at: 3824 5453 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 733 372 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2935 1537
Size: 275 1123 4090
Fragments arranged by size:
4090 1123 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2674 3418 1353
Size: 1321 744 3423
Fragments arranged by size:
3423 1321 744
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4075 4449 4595 387
Size: 1064 138 2486 374 146 1280
Fragments arranged by size:
2486 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2083 3551 4148 4935 5203 1239
Size: 393 451 1468 597 787 268 1524
Fragments arranged by size:
1524 1468 787 597 451 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2024 2042 2024
Size: 18 5470
EcoO109I rG'GnC_Cy
Cuts at: 2065 2065
Size: 5488
EcoRI G'AATT_C
Cuts at: 2385 2797 3175 2385
Size: 412 378 4698
Fragments arranged by size:
4698 412 378
EcoRV GAT'ATC
Cuts at: 2263 2263
Size: 5488
FspI TGC'GCA
Cuts at: 3994 3994
Size: 5488
HaeII r_GCGC'y
Cuts at: 1678 2306 4635 1678
Size: 628 2329 2531
Fragments arranged by size:
2531 2329 628
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2081 2113 4129 4161 4203
Size: 32 135 32 509 32 2016 32 42
Cuts at: 4203 4235 1373
Size: 32 2626
Fragments arranged by size:
2626 2016 509 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2832 3078 669
Size: 988 281 894 246 3079
Fragments arranged by size:
3079 988 894 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5488
HpaI GTT'AAC
Cuts at: 3078 3078
Size: 5488
KpnI G_GTAC'C
Cuts at: 2638 2813 2638
Size: 175 5313
MfeI C'AATT_G
Cuts at: 3087 3087
Size: 5488
MluI A'CGCG_T
Cuts at: 5364 5364
Size: 5488
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2031 4602 4786 1305
Size: 726 2571 184 2007
Fragments arranged by size:
2571 2007 726 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2204 10
Size: 54 1425 343 372 3294
Fragments arranged by size:
3294 1425 372 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2210 2225 2443 2597 3446 3805 3964
Size: 648 1044 15 218 154 849 359 159
Cuts at: 3964 518
Size: 2042
Fragments arranged by size:
2042 1044 849 648 359 218 159 154
15
MspA1I CmG'CkG
Cuts at: 1606 2103 2187 2406 2904 3581 4729 4974 1606
Size: 497 84 219 498 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 498 497 245 219 84
NaeI GCC'GGC
Cuts at: 2251 2251
Size: 5488
NcoI C'CATG_G
Cuts at: 513 1065 2205 513
Size: 552 1140 3796
Fragments arranged by size:
3796 1140 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5488
NgoMIV G'CCGG_C
Cuts at: 2249 2249
Size: 5488
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5488
NotI GC'GGCC_GC
Cuts at: 2935 2935
Size: 5488
NspI r_CATG'y
Cuts at: 1132 1229 2846 4391 1132
Size: 97 1617 1545 2229
Fragments arranged by size:
2229 1617 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5488
PciI A'CATG_T
Cuts at: 4387 4387
Size: 5488
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5488
PmeI GTTT'AAAC
Cuts at: 2792 2792
Size: 5488
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3557 3589 5070 5102 3557
Size: 32 1481 32 3943
Fragments arranged by size:
3943 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2065 2065
Size: 5488
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5488
PsiI TTA'TAA
Cuts at: 3058 3058
Size: 5488
PstI C_TGCA'G
Cuts at: 830 2118 2698 2840 830
Size: 1288 580 142 3478
Fragments arranged by size:
3478 1288 580 142
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5488
PvuII CAG'CTG
Cuts at: 2406 2406
Size: 5488
SalI G'TCGA_C
Cuts at: 1936 2830 1936
Size: 894 4594
SbfI CC_TGCA'GG
Cuts at: 2840 2840
Size: 5488
ScaI AGT'ACT
Cuts at: 3736 5448 3736
Size: 1712 3776
SfcI C'TryA_G
Cuts at: 826 1045 2114 2694 2836 3971 4652 4843 826
Size: 219 1069 580 142 1135 681 191 1471
Fragments arranged by size:
1471 1135 1069 681 580 219 191 142
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5488
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5488
SmaI CCC'GGG
Cuts at: 1872 2815 1872
Size: 943 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2039 2060 3592 4493 4755 820
Size: 197 926 96 21 1532 901 262 1553
Fragments arranged by size:
1553 1532 926 901 262 197 96 21
SnaBI TAC'GTA
Cuts at: 493 3279 493
Size: 2786 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5488
SphI G_CATG'C
Cuts at: 1132 2846 1132
Size: 1714 3774
SspI AAT'ATT
Cuts at: 5 52 3412 5
Size: 47 3360 2081
Fragments arranged by size:
3360 2081 47
StuI AGG'CCT
Cuts at: 1517 2081 1517
Size: 564 4924
StyI C'CwwG_G
Cuts at: 513 1065 2205 2298 2927 513
Size: 552 1140 93 629 3074
Fragments arranged by size:
3074 1140 629 552 93
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3515 3532 3685 3870 4315 325
Size: 1255 1935 17 153 185 445 1498
Fragments arranged by size:
1935 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2400 3734 5446
Size: 274 80 33 51 1443 423 1334 1712
Cuts at: 5446 96
Size: 138
Fragments arranged by size:
1712 1443 1334 423 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5448 5480 5448
Size: 32 5456
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5488
XbaI T'CTAG_A
Cuts at: 2824 2824
Size: 5488
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5488
XmaI C'CCGG_G
Cuts at: 1870 2813 1870
Size: 943 4545
XmnI GAAnn'nnTTC
Cuts at: 2610 3617 2610
Size: 1007 4481
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3296 276
Size: 53 83 186 936 1762 2468
Fragments arranged by size:
2468 1762 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AscI AseI
AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoNI EcoO109I EcoRI EcoRV FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI
NotI NspI PasI PciI PflMI PmeI PpiI PpuMI
PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AvrII BbeI BbvCI BfrBI
BplI Bpu10I BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI
FalI FseI FspAI KasI NarI NruI NsiI PacI
PfoI PmlI PspOMI PspXI PsrI RsrII SacI SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI