Restriction map for
pFN21AB6334
(Circular) (Six-base) MAPSORT of: pFN21AB6334.seq Check: 3466 from: 1 to: 5572
pFN21AB6334 5572 bp
With 182 enzymes: SgfI *
October 20, 2009 10:40 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3382 278
Size: 53 83 186 936 1846 2468
Fragments arranged by size:
2468 1846 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2915 1937
Size: 978 4594
Acc65I G'GTAC_C
Cuts at: 2893 2893
Size: 5572
AclI AA'CG_TT
Cuts at: 1563 3699 4072 1563
Size: 2136 373 3063
Fragments arranged by size:
3063 2136 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2048 2309 3635 5019 5287 1632
Size: 416 261 1326 1384 268 1917
Fragments arranged by size:
1917 1384 1326 416 268 261
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5375
AflIII A'CryG_T
Cuts at: 1203 2158 2643 4471 5448 1203
Size: 955 485 1828 977 1327
Fragments arranged by size:
1828 1327 977 955 485
AgeI A'CCGG_T
Cuts at: 4403 4403
Size: 5572
AhdI GACnn_n'nnGTC
Cuts at: 4301 4301
Size: 5572
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5572
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5572
AlwNI CAG_nnn'CTG
Cuts at: 3315 4887 3315
Size: 1572 4000
ApaLI G'TGCA_C
Cuts at: 3629 4785 3629
Size: 1156 4416
ApoI r'AATT_y
Cuts at: 1493 2881 3107 3259 5368 1493
Size: 1388 226 152 2109 1697
Fragments arranged by size:
2109 1697 1388 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4126 160
Size: 872 3094 1606
Fragments arranged by size:
3094 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5572
AvaI C'yCGr_G
Cuts at: 1870 1943 2897 1870
Size: 73 954 4545
Fragments arranged by size:
4545 954 73
BamHI G'GATC_C
Cuts at: 2902 3269 2902
Size: 367 5205
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2893 4348 618
Size: 325 217 627 1106 1455 1842
Fragments arranged by size:
1842 1455 1106 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2891 1391
Size: 1500 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4601
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3763 3797 1903
Size: 34 1826 34 3678
Fragments arranged by size:
3678 1826 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3464 4674 3464
Size: 1210 4362
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5572
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4183 136
Size: 107 122 71 631 605 2511 1525
Fragments arranged by size:
2511 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2148 5567 2148
Size: 3419 2153
BlpI GC'TnA_GC
Cuts at: 2989 2989
Size: 5572
Bme1580I G_kGCm'C
Cuts at: 1790 3633 4789 1790
Size: 1843 1156 2573
Fragments arranged by size:
2573 1843 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5572
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3303 4261 442
Size: 416 53 83 399 24 1886 958 1753
Fragments arranged by size:
1886 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5572
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2039 2519 2636 4232 1239
Size: 800 480 117 1596 2579
Fragments arranged by size:
2579 1596 800 480 117
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2400 3697 4562 4860 2400
Size: 1297 865 298 3112
Fragments arranged by size:
3112 1297 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4235 882
Size: 617 2736 2219
Fragments arranged by size:
2736 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2731 3363 493
Size: 711 1527 632 2702
Fragments arranged by size:
2702 1527 711 632
BsaBI GATnn'nnATC
Cuts at: 2078 2801 5566 2078
Size: 723 2765 2084
Fragments arranged by size:
2765 2084 723
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3379 3761 4396 275
Size: 53 83 186 936 1846 382 635 1451
Fragments arranged by size:
1846 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2277 4005 4403 4677 4824 5235 2277
Size: 1728 398 274 147 411 2614
Fragments arranged by size:
2614 1728 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2492 2522 1178
Size: 30 165 30 1089 30 4228
Fragments arranged by size:
4228 1089 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2180 2507 2516 1186
Size: 994 327 9 4242
Fragments arranged by size:
4242 994 327 9
BseYI C'CCAG_C
Cuts at: 2358 2827 4775 5271 2358
Size: 469 1948 496 2659
Fragments arranged by size:
2659 1948 496 469
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2184 1163
Size: 573 448 4551
Fragments arranged by size:
4551 573 448
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3022 3783 4811 1540
Size: 275 186 1021 761 1028 2301
Fragments arranged by size:
2301 1028 1021 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3633 3718 4789 3633
Size: 85 1071 4416
Fragments arranged by size:
4416 1071 85
BsmI GAATG_Cn'
Cuts at: 3083 3176 3083
Size: 93 5479
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2891 3633 3718 4789 1391
Size: 399 1101 742 85 1071 2174
Fragments arranged by size:
2174 1101 1071 742 399 85
BspEI T'CCGG_A
Cuts at: 2277 5235 2277
Size: 2958 2614
BspHI T'CATG_A
Cuts at: 3461 5191 3461
Size: 1730 3842
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2927 844
Size: 2083 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3459 1394
Size: 429 1636 3507
Fragments arranged by size:
3507 1636 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4067 4241 65
Size: 1183 2819 174 1396
Fragments arranged by size:
2819 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4216 4403 1700
Size: 110 2406 187 2869
Fragments arranged by size:
2869 2406 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5572
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5572
BssSI C'ACGA_G
Cuts at: 2742 3632 4644 2742
Size: 890 1012 3670
Fragments arranged by size:
3670 1012 890
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5572
BstBI TT'CG_AA
Cuts at: 4376 4376
Size: 5572
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5572
BstXI CCAn_nnnn'nTGG
Cuts at: 2668 2668
Size: 5572
BstYI r'GATC_y
Cuts at: 1972 2148 2902 3269 3654 3671 5123 5209 5221
Size: 176 754 367 385 17 1452 86 12
Cuts at: 5221 5567 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 754 385 367 346 176 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 5020
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2641 487
Size: 683 56 1415 3418
Fragments arranged by size:
3418 1415 683 56
BtsI GCAGTG_nn'
Cuts at: 3088 3882 3902 3088
Size: 794 20 4758
Fragments arranged by size:
4758 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5572
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5537
DraI TTT'AAA
Cuts at: 2876 2876
Size: 5572
DraIII CAC_nnn'GTG
Cuts at: 2722 2722
Size: 5572
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4579 809
Size: 507 3263 1802
Fragments arranged by size:
3263 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2526 3019 3908
Size: 54 1425 50 275 18 696 493 889
Cuts at: 3908 5537 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 696 493 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 3019 1537
Size: 275 1207 4090
Fragments arranged by size:
4090 1207 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2285 3502 1353
Size: 932 1217 3423
Fragments arranged by size:
3423 1217 932
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4159 4533 4679 387
Size: 1064 138 2570 374 146 1280
Fragments arranged by size:
2570 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2039 2048 2309 2519 2636 3635 4232
Size: 393 407 9 261 210 117 999 597
Cuts at: 4232 5019 5287 1239
Size: 787 268 1524
Fragments arranged by size:
1524 999 787 597 407 393 268 261
210 117 9
EcoRI G'AATT_C
Cuts at: 2881 3259 2881
Size: 378 5194
FspI TGC'GCA
Cuts at: 4078 4078
Size: 5572
HaeII r_GCGC'y
Cuts at: 1678 4719 1678
Size: 3041 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2135 2167 2312 2344 4213
Size: 32 135 32 563 32 145 32 1869
Cuts at: 4213 4245 4287 4319 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1869 563 145 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2916 3162 669
Size: 988 281 978 246 3079
Fragments arranged by size:
3079 988 978 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5572
HpaI GTT'AAC
Cuts at: 3162 3162
Size: 5572
KpnI G_GTAC'C
Cuts at: 2897 2897
Size: 5572
MfeI C'AATT_G
Cuts at: 3171 3171
Size: 5572
MluI A'CGCG_T
Cuts at: 5448 5448
Size: 5572
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2490 4686 4870 1305
Size: 1185 2196 184 2007
Fragments arranged by size:
2196 2007 1185 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3750
Fragments arranged by size:
3750 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2648 2660 2666 3530 3889 4048 518
Size: 648 1482 12 6 864 359 159 2042
Fragments arranged by size:
2042 1482 864 648 359 159 12 6
MspA1I CmG'CkG
Cuts at: 1606 2026 2041 2455 2988 3665 4813 5058 1606
Size: 420 15 414 533 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 533 420 414 245 15
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 5020
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5572
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5572
NotI GC'GGCC_GC
Cuts at: 3019 3019
Size: 5572
NspI r_CATG'y
Cuts at: 1132 1229 2162 2647 2930 4475 1132
Size: 97 933 485 283 1545 2229
Fragments arranged by size:
2229 1545 933 485 283 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5572
PciI A'CATG_T
Cuts at: 2158 2643 4471 2158
Size: 485 1828 3259
Fragments arranged by size:
3259 1828 485
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5572
PmeI GTTT'AAAC
Cuts at: 2876 2876
Size: 5572
PmlI CAC'GTG
Cuts at: 2731 2731
Size: 5572
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3641 3673 5154 5186 3641
Size: 32 1481 32 4027
Fragments arranged by size:
4027 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5572
PsiI TTA'TAA
Cuts at: 3142 3142
Size: 5572
PstI C_TGCA'G
Cuts at: 830 2924 830
Size: 2094 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5572
PvuII CAG'CTG
Cuts at: 2026 2041 2026
Size: 15 5557
SalI G'TCGA_C
Cuts at: 1936 2914 1936
Size: 978 4594
SapI GCTCTTCn'nnn_
Cuts at: 2285 2285
Size: 5572
SbfI CC_TGCA'GG
Cuts at: 2924 2924
Size: 5572
ScaI AGT'ACT
Cuts at: 3820 5532 3820
Size: 1712 3860
SfcI C'TryA_G
Cuts at: 826 1045 2182 2920 4055 4736 4927 826
Size: 219 1137 738 1135 681 191 1471
Fragments arranged by size:
1471 1137 1135 738 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5572
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5572
SmaI CCC'GGG
Cuts at: 1872 2899 1872
Size: 1027 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2415 3676 4577 4839 820
Size: 197 926 472 1261 901 262 1553
Fragments arranged by size:
1553 1261 926 901 472 262 197
SnaBI TAC'GTA
Cuts at: 493 3363 493
Size: 2870 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5572
SphI G_CATG'C
Cuts at: 1132 2930 1132
Size: 1798 3774
SspI AAT'ATT
Cuts at: 5 52 3496 5
Size: 47 3444 2081
Fragments arranged by size:
3444 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5572
StyI C'CwwG_G
Cuts at: 513 1065 2223 3011 513
Size: 552 1158 788 3074
Fragments arranged by size:
3074 1158 788 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3599 3616 3769 3954 4399 325
Size: 1255 2019 17 153 185 445 1498
Fragments arranged by size:
2019 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3818 5530 96
Size: 274 80 33 51 1443 1841 1712 138
Fragments arranged by size:
1841 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5532 5564 5532
Size: 32 5540
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5572
XbaI T'CTAG_A
Cuts at: 2908 2908
Size: 5572
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5572
XmaI C'CCGG_G
Cuts at: 1870 2897 1870
Size: 1027 4545
XmnI GAAnn'nnTTC
Cuts at: 3701 3701
Size: 5572
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3380 276
Size: 53 83 186 936 1846 2468
Fragments arranged by size:
2468 1846 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DraIII DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PmlI PpiI PshAI PsiI PstI PvuI PvuII SalI
SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI
PspOMI PspXI PsrI RsrII SacI SacII SanDI SexAI
SfiI SfoI SrfI SwaI XcmI