Restriction map for
pFN21AB3876
(Circular) (Six-base) MAPSORT of: pFN21AB3876.seq Check: 3407 from: 1 to: 5200
pFN21AB3876 5200 bp
With 182 enzymes: SgfI *
October 20, 2009 10:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3010 278
Size: 53 83 186 936 1474 2468
Fragments arranged by size:
2468 1474 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2543 1937
Size: 606 4594
Acc65I G'GTAC_C
Cuts at: 2211 2521 2211
Size: 310 4890
AclI AA'CG_TT
Cuts at: 1563 3327 3700 1563
Size: 1764 373 3063
Fragments arranged by size:
3063 1764 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3263 4647 4915 1632
Size: 1631 1384 268 1917
Fragments arranged by size:
1917 1631 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5003
AflIII A'CryG_T
Cuts at: 1203 4099 5076 1203
Size: 2896 977 1327
Fragments arranged by size:
2896 1327 977
AgeI A'CCGG_T
Cuts at: 4031 4031
Size: 5200
AhdI GACnn_n'nnGTC
Cuts at: 3929 3929
Size: 5200
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5200
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5200
AlwNI CAG_nnn'CTG
Cuts at: 2306 2943 4515 2306
Size: 637 1572 2991
Fragments arranged by size:
2991 1572 637
ApaLI G'TGCA_C
Cuts at: 3257 4413 3257
Size: 1156 4044
ApoI r'AATT_y
Cuts at: 1493 2450 2509 2735 2887 4996 1493
Size: 957 59 226 152 2109 1697
Fragments arranged by size:
2109 1697 957 226 152 59
AseI AT'TA_AT
Cuts at: 160 1032 3754 160
Size: 872 2722 1606
Fragments arranged by size:
2722 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5200
AvaI C'yCGr_G
Cuts at: 1870 1943 2166 2525 1870
Size: 73 223 359 4545
Fragments arranged by size:
4545 359 223 73
BamHI G'GATC_C
Cuts at: 2530 2897 2530
Size: 367 4833
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2211 2408 2521 3976 618
Size: 325 217 627 424 197 113 1455 1842
Fragments arranged by size:
1842 1455 627 424 325 217 197 113
BanII G_rGCy'C
Cuts at: 1391 2519 1391
Size: 1128 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4229
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3391 3425 1903
Size: 34 1454 34 3678
Fragments arranged by size:
3678 1454 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2240 3092 4302 2240
Size: 852 1210 3138
Fragments arranged by size:
3138 1210 852
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5200
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3811 136
Size: 107 122 71 631 605 2139 1525
Fragments arranged by size:
2139 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5195 5195
Size: 5200
BlpI GC'TnA_GC
Cuts at: 2617 2617
Size: 5200
Bme1580I G_kGCm'C
Cuts at: 1790 2127 3261 4417 1790
Size: 337 1134 1156 2573
Fragments arranged by size:
2573 1156 1134 337
BmgBI CAC'GTC
Cuts at: 1318 2483 1318
Size: 1165 4035
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2931 3889 442
Size: 416 53 83 399 24 1514 958 1753
Fragments arranged by size:
1753 1514 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5200
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2215 2351 3860 1239
Size: 976 136 1509 2579
Fragments arranged by size:
2579 1509 976 136
Bpu10I CC'TnA_GC
Cuts at: 2094 2094
Size: 5200
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2144 3325 4190 4488 2144
Size: 1181 865 298 2856
Fragments arranged by size:
2856 1181 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3863 882
Size: 617 2364 2219
Fragments arranged by size:
2364 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2176 2991 493
Size: 711 972 815 2702
Fragments arranged by size:
2702 972 815 711
BsaBI GATnn'nnATC
Cuts at: 5194 5194
Size: 5200
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3007 3389 4024 275
Size: 53 83 186 936 1474 382 635 1451
Fragments arranged by size:
1474 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2025 3633 4031 4305 4452 4863 2025
Size: 1608 398 274 147 411 2362
Fragments arranged by size:
2362 1608 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2052 2082 1178
Size: 30 165 30 649 30 4296
Fragments arranged by size:
4296 649 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5200
BseYI C'CCAG_C
Cuts at: 2429 2435 4403 4899 2429
Size: 6 1968 496 2730
Fragments arranged by size:
2730 1968 496 6
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4627
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2650 3411 4439 1540
Size: 275 186 649 761 1028 2301
Fragments arranged by size:
2301 1028 761 649 275 186
BsiHKAI G_wGCw'C
Cuts at: 3261 3346 4417 3261
Size: 85 1071 4044
Fragments arranged by size:
4044 1071 85
BsmI GAATG_Cn'
Cuts at: 2711 2804 2711
Size: 93 5107
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2127 2519 3261 3346 4417 1391
Size: 399 337 392 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 392 337 85
BspEI T'CCGG_A
Cuts at: 4863 4863
Size: 5200
BspHI T'CATG_A
Cuts at: 2139 3089 4819 2139
Size: 950 1730 2520
Fragments arranged by size:
2520 1730 950
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2353 2555 844
Size: 1509 202 3489
Fragments arranged by size:
3489 1509 202
BsrBI CCG'CTC
Cuts at: 1394 1823 3087 1394
Size: 429 1264 3507
Fragments arranged by size:
3507 1264 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3695 3869 65
Size: 1183 2447 174 1396
Fragments arranged by size:
2447 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3844 4031 1700
Size: 110 2034 187 2869
Fragments arranged by size:
2869 2034 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5200
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5200
BssSI C'ACGA_G
Cuts at: 3260 4272 3260
Size: 1012 4188
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5200
BstBI TT'CG_AA
Cuts at: 4004 4004
Size: 5200
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5200
BstYI r'GATC_y
Cuts at: 1972 2530 2897 3282 3299 4751 4837 4849 5195
Size: 558 367 385 17 1452 86 12 346
Cuts at: 5195 1972
Size: 1977
Fragments arranged by size:
1977 1452 558 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2496 2496
Size: 5200
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4648
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4461
Fragments arranged by size:
4461 683 56
BtsI GCAGTG_nn'
Cuts at: 2716 3510 3530 2716
Size: 794 20 4386
Fragments arranged by size:
4386 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5200
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5165
DraI TTT'AAA
Cuts at: 2504 2504
Size: 5200
DraIII CAC_nnn'GTG
Cuts at: 2408 2408
Size: 5200
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4207 809
Size: 507 2891 1802
Fragments arranged by size:
2891 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2070 2647 3536
Size: 54 1425 50 275 18 240 577 889
Cuts at: 3536 5165 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 577 275 240 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2647 1537
Size: 275 835 4090
Fragments arranged by size:
4090 835 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3130 1353
Size: 1777 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2481 3787 4161 4307 387
Size: 1064 138 892 1306 374 146 1280
Fragments arranged by size:
1306 1280 1064 892 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2215 2351 3263 3860 4647 4915 1239
Size: 393 583 136 912 597 787 268 1524
Fragments arranged by size:
1524 912 787 597 583 393 268 136
EcoNI CCTnn'n_nnAGG
Cuts at: 2051 2051
Size: 5200
EcoRI G'AATT_C
Cuts at: 2450 2509 2887 2450
Size: 59 378 4763
Fragments arranged by size:
4763 378 59
FspI TGC'GCA
Cuts at: 3706 3706
Size: 5200
HaeII r_GCGC'y
Cuts at: 1678 4347 1678
Size: 2669 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3841 3873 3915 3947 1373
Size: 32 135 32 2269 32 42 32 2626
Fragments arranged by size:
2626 2269 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2544 2790 669
Size: 988 281 606 246 3079
Fragments arranged by size:
3079 988 606 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5200
HpaI GTT'AAC
Cuts at: 2790 2790
Size: 5200
KpnI G_GTAC'C
Cuts at: 2215 2525 2215
Size: 310 4890
MfeI C'AATT_G
Cuts at: 2799 2799
Size: 5200
MluI A'CGCG_T
Cuts at: 5076 5076
Size: 5200
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4314 4498 1305
Size: 3009 184 2007
Fragments arranged by size:
3009 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2072 10
Size: 54 1425 343 240 3138
Fragments arranged by size:
3138 1425 343 240 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2009 3158 3517 3676 518
Size: 648 843 1149 359 159 2042
Fragments arranged by size:
2042 1149 843 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2616 3293 4441 4686 1606
Size: 1010 677 1148 245 2120
Fragments arranged by size:
2120 1148 1010 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4648
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5200
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5200
NotI GC'GGCC_GC
Cuts at: 2647 2647
Size: 5200
NspI r_CATG'y
Cuts at: 1132 1229 2092 2558 4103 1132
Size: 97 863 466 1545 2229
Fragments arranged by size:
2229 1545 863 466 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5200
PciI A'CATG_T
Cuts at: 4099 4099
Size: 5200
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2306 1108
Size: 1198 4002
PmeI GTTT'AAAC
Cuts at: 2504 2504
Size: 5200
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3269 3301 4782 4814 3269
Size: 32 1481 32 3655
Fragments arranged by size:
3655 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5200
PsiI TTA'TAA
Cuts at: 2770 2770
Size: 5200
PstI C_TGCA'G
Cuts at: 830 2552 830
Size: 1722 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5200
SalI G'TCGA_C
Cuts at: 1936 2542 1936
Size: 606 4594
SbfI CC_TGCA'GG
Cuts at: 2552 2552
Size: 5200
ScaI AGT'ACT
Cuts at: 3448 5160 3448
Size: 1712 3488
SexAI A'CCwGG_T
Cuts at: 2404 2404
Size: 5200
SfcI C'TryA_G
Cuts at: 826 1045 2383 2548 3683 4364 4555 826
Size: 219 1338 165 1135 681 191 1471
Fragments arranged by size:
1471 1338 1135 681 219 191 165
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5200
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5200
SmaI CCC'GGG
Cuts at: 1872 2527 1872
Size: 655 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2159 3304 4205 4467 820
Size: 197 926 216 1145 901 262 1553
Fragments arranged by size:
1553 1145 926 901 262 216 197
SnaBI TAC'GTA
Cuts at: 493 2991 493
Size: 2498 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5200
SphI G_CATG'C
Cuts at: 1132 2558 1132
Size: 1426 3774
SspI AAT'ATT
Cuts at: 5 52 3124 5
Size: 47 3072 2081
Fragments arranged by size:
3072 2081 47
StuI AGG'CCT
Cuts at: 1517 2314 1517
Size: 797 4403
StyI C'CwwG_G
Cuts at: 513 1065 2639 513
Size: 552 1574 3074
Fragments arranged by size:
3074 1574 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3227 3244 3397 3582 4027 325
Size: 1255 1647 17 153 185 445 1498
Fragments arranged by size:
1647 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3446 5158 96
Size: 274 80 33 51 1443 1469 1712 138
Fragments arranged by size:
1712 1469 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2052 2084 5160 5192 2052
Size: 32 3076 32 2060
Fragments arranged by size:
3076 2060 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 2484 1316
Size: 1168 4032
XbaI T'CTAG_A
Cuts at: 2536 2536
Size: 5200
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5200
XmaI C'CCGG_G
Cuts at: 1870 2525 1870
Size: 655 4545
XmnI GAAnn'nnTTC
Cuts at: 3329 3329
Size: 5200
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3008 276
Size: 53 83 186 936 1474 2468
Fragments arranged by size:
2468 1474 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI
ClaI CspCI DraI DraIII DrdI EaeI EagI EarI
EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI
SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I EcoICRI
EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI PvuII RsrII SacI SacII SanDI SapI
SfiI SfoI SrfI SwaI XcmI