Restriction map for
pFN21AB3401
(Circular) (Six-base) MAPSORT of: pFN21AB3401.seq Check: 4599 from: 1 to: 5452
pFN21AB3401 5452 bp
With 182 enzymes: SgfI *
October 20, 2009 10:53 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3262 278
Size: 53 83 186 936 1726 2468
Fragments arranged by size:
2468 1726 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2795 1937
Size: 858 4594
Acc65I G'GTAC_C
Cuts at: 2773 2773
Size: 5452
AclI AA'CG_TT
Cuts at: 1563 3579 3952 1563
Size: 2016 373 3063
Fragments arranged by size:
3063 2016 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2606 3515 4899 5167 1632
Size: 974 909 1384 268 1917
Fragments arranged by size:
1917 1384 974 909 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5255
AflIII A'CryG_T
Cuts at: 1203 2551 4351 5328 1203
Size: 1348 1800 977 1327
Fragments arranged by size:
1800 1348 1327 977
AgeI A'CCGG_T
Cuts at: 4283 4283
Size: 5452
AhdI GACnn_n'nnGTC
Cuts at: 4181 4181
Size: 5452
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5452
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5452
AlwNI CAG_nnn'CTG
Cuts at: 2033 3195 4767 2033
Size: 1162 1572 2718
Fragments arranged by size:
2718 1572 1162
ApaI G_GGCC'C
Cuts at: 2408 2408
Size: 5452
ApaLI G'TGCA_C
Cuts at: 3509 4665 3509
Size: 1156 4296
ApoI r'AATT_y
Cuts at: 1493 2761 2987 3139 5248 1493
Size: 1268 226 152 2109 1697
Fragments arranged by size:
2109 1697 1268 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4006 160
Size: 872 2974 1606
Fragments arranged by size:
2974 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5452
AvaI C'yCGr_G
Cuts at: 1870 1943 2777 1870
Size: 73 834 4545
Fragments arranged by size:
4545 834 73
AvrII C'CTAG_G
Cuts at: 2510 2510
Size: 5452
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2373 2406 2373
Size: 33 5419
BamHI G'GATC_C
Cuts at: 2782 3149 2782
Size: 367 5085
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2773 4228 618
Size: 325 217 627 986 1455 1842
Fragments arranged by size:
1842 1455 986 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2408 2771 1391
Size: 1017 363 4072
Fragments arranged by size:
4072 1017 363
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4481
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3643 3677 1903
Size: 34 1706 34 3678
Fragments arranged by size:
3678 1706 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3344 4554 3344
Size: 1210 4242
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5452
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2403 4063 136
Size: 107 122 71 631 605 731 1660 1525
Fragments arranged by size:
1660 1525 731 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5447 5447
Size: 5452
BlpI GC'TnA_GC
Cuts at: 2869 2869
Size: 5452
Bme1580I G_kGCm'C
Cuts at: 1790 2408 3513 4669 1790
Size: 618 1105 1156 2573
Fragments arranged by size:
2573 1156 1105 618
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5452
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3183 4141 442
Size: 416 53 83 399 24 1766 958 1753
Fragments arranged by size:
1766 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 2421 1056
Size: 1365 4087
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2292 4112 1239
Size: 1053 1820 2579
Fragments arranged by size:
2579 1820 1053
Bpu10I CC'TnA_GC
Cuts at: 2664 2664
Size: 5452
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3577 4442 4740 3577
Size: 865 298 4289
Fragments arranged by size:
4289 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4115 882
Size: 617 2616 2219
Fragments arranged by size:
2616 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2552 3243 493
Size: 711 1348 691 2702
Fragments arranged by size:
2702 1348 711 691
BsaBI GATnn'nnATC
Cuts at: 2316 5446 2316
Size: 3130 2322
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3259 3641 4276 275
Size: 53 83 186 936 1726 382 635 1451
Fragments arranged by size:
1726 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3885 4283 4557 4704 5115 3885
Size: 398 274 147 411 4222
Fragments arranged by size:
4222 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5227
Fragments arranged by size:
5227 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5452
BseYI C'CCAG_C
Cuts at: 2026 4655 5151 2026
Size: 2629 496 2327
Fragments arranged by size:
2629 2327 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4879
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2902 3663 4691 1540
Size: 275 186 901 761 1028 2301
Fragments arranged by size:
2301 1028 901 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3513 3598 4669 3513
Size: 85 1071 4296
Fragments arranged by size:
4296 1071 85
BsmI GAATG_Cn'
Cuts at: 2245 2963 3056 2245
Size: 718 93 4641
Fragments arranged by size:
4641 718 93
BsmBI CGTCTCn'nnnn_
Cuts at: 2689 2689
Size: 5452
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2408 2771 3513 3598 4669 1391
Size: 399 618 363 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 618 399 363 85
BspEI T'CCGG_A
Cuts at: 5115 5115
Size: 5452
BspHI T'CATG_A
Cuts at: 3341 5071 3341
Size: 1730 3722
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2807 844
Size: 1963 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3339 1394
Size: 429 1516 3507
Fragments arranged by size:
3507 1516 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3947 4121 65
Size: 1183 2699 174 1396
Fragments arranged by size:
2699 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4096 4283 1700
Size: 110 2286 187 2869
Fragments arranged by size:
2869 2286 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5452
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5452
BssSI C'ACGA_G
Cuts at: 3512 4524 3512
Size: 1012 4440
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2630 794
Size: 1836 3616
BstBI TT'CG_AA
Cuts at: 4256 4256
Size: 5452
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5452
BstYI r'GATC_y
Cuts at: 1972 2782 3149 3534 3551 5003 5089 5101 5447
Size: 810 367 385 17 1452 86 12 346
Cuts at: 5447 1972
Size: 1977
Fragments arranged by size:
1977 1452 810 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2212 513
Size: 552 1147 3753
Fragments arranged by size:
3753 1147 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4713
Fragments arranged by size:
4713 683 56
BtsI GCAGTG_nn'
Cuts at: 2968 3762 3782 2968
Size: 794 20 4638
Fragments arranged by size:
4638 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5452
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2092 2127 529
Size: 35 1528 35 3854
Fragments arranged by size:
3854 1528 35 35
DraI TTT'AAA
Cuts at: 2756 2756
Size: 5452
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4459 809
Size: 507 3143 1802
Fragments arranged by size:
3143 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2100 2215 2643
Size: 54 1425 50 275 18 270 115 428
Cuts at: 2643 2899 3788 5417 8
Size: 256 889 1629 43
Fragments arranged by size:
1629 1425 889 428 275 270 256 115
54 50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2899 1537
Size: 275 1087 4090
Fragments arranged by size:
4090 1087 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2610 2687 3382 1353
Size: 1257 77 695 3423
Fragments arranged by size:
3423 1257 695 77
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2213 2453 4039 4413 4559 387
Size: 1064 138 624 240 1586 374 146 1280
Fragments arranged by size:
1586 1280 1064 624 374 240 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2292 2606 3515 4112 4899 5167 1239
Size: 393 660 314 909 597 787 268 1524
Fragments arranged by size:
1524 909 787 660 597 393 314 268
EcoO109I rG'GnC_Cy
Cuts at: 2405 2405
Size: 5452
EcoRI G'AATT_C
Cuts at: 2761 3139 2761
Size: 378 5074
FspI TGC'GCA
Cuts at: 3958 3958
Size: 5452
HaeII r_GCGC'y
Cuts at: 1678 2677 4599 1678
Size: 999 1922 2531
Fragments arranged by size:
2531 1922 999
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2521 2553 4093 4125 4167
Size: 32 135 32 949 32 1540 32 42
Cuts at: 4167 4199 1373
Size: 32 2626
Fragments arranged by size:
2626 1540 949 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2796 3042 669
Size: 988 281 858 246 3079
Fragments arranged by size:
3079 988 858 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5452
HpaI GTT'AAC
Cuts at: 3042 3042
Size: 5452
KpnI G_GTAC'C
Cuts at: 2777 2777
Size: 5452
MfeI C'AATT_G
Cuts at: 3051 3051
Size: 5452
MluI A'CGCG_T
Cuts at: 5328 5328
Size: 5452
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4566 4750 1305
Size: 3261 184 2007
Fragments arranged by size:
3261 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2102 2645 10
Size: 54 1425 343 270 543 2817
Fragments arranged by size:
2817 1425 543 343 270 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2054 2217 3410 3769 3928 518
Size: 648 888 163 1193 359 159 2042
Fragments arranged by size:
2042 1193 888 648 359 163 159
MspA1I CmG'CkG
Cuts at: 1606 2868 3545 4693 4938 1606
Size: 1262 677 1148 245 2120
Fragments arranged by size:
2120 1262 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2212 513
Size: 552 1147 3753
Fragments arranged by size:
3753 1147 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5452
NheI G'CTAG_C
Cuts at: 1052 2417 1052
Size: 1365 4087
NotI GC'GGCC_GC
Cuts at: 2899 2899
Size: 5452
NspI r_CATG'y
Cuts at: 1132 1229 2810 4355 1132
Size: 97 1581 1545 2229
Fragments arranged by size:
2229 1581 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5452
PciI A'CATG_T
Cuts at: 4351 4351
Size: 5452
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2033 1108
Size: 925 4527
PfoI T'CCnGG_A
Cuts at: 2368 2368
Size: 5452
PmeI GTTT'AAAC
Cuts at: 2756 2756
Size: 5452
PmlI CAC'GTG
Cuts at: 2552 2552
Size: 5452
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3521 3553 5034 5066 3521
Size: 32 1481 32 3907
Fragments arranged by size:
3907 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5452
PsiI TTA'TAA
Cuts at: 3022 3022
Size: 5452
PspOMI G'GGCC_C
Cuts at: 2404 2404
Size: 5452
PstI C_TGCA'G
Cuts at: 830 2562 2626 2804 830
Size: 1732 64 178 3478
Fragments arranged by size:
3478 1732 178 64
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5452
SalI G'TCGA_C
Cuts at: 1936 2794 1936
Size: 858 4594
SbfI CC_TGCA'GG
Cuts at: 2804 2804
Size: 5452
ScaI AGT'ACT
Cuts at: 3700 5412 3700
Size: 1712 3740
SfcI C'TryA_G
Cuts at: 826 1045 2385 2558 2622 2800 3935 4616 4807
Size: 219 1340 173 64 178 1135 681 191
Cuts at: 4807 826
Size: 1471
Fragments arranged by size:
1471 1340 1135 681 219 191 178 173
64
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5452
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5452
SmaI CCC'GGG
Cuts at: 1872 2779 1872
Size: 907 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3556 4457 4719 820
Size: 197 926 1613 901 262 1553
Fragments arranged by size:
1613 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3243 493
Size: 2750 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5452
SphI G_CATG'C
Cuts at: 1132 2810 1132
Size: 1678 3774
SspI AAT'ATT
Cuts at: 5 52 3376 5
Size: 47 3324 2081
Fragments arranged by size:
3324 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5452
StyI C'CwwG_G
Cuts at: 513 1065 2212 2261 2510 2891 513
Size: 552 1147 49 249 381 3074
Fragments arranged by size:
3074 1147 552 381 249 49
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2117 2539 3479 3496 3649 3834 4279
Size: 1255 537 422 940 17 153 185 445
Cuts at: 4279 325
Size: 1498
Fragments arranged by size:
1498 1255 940 537 445 422 185 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3698 5410 96
Size: 274 80 33 51 1443 1721 1712 138
Fragments arranged by size:
1721 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5412 5444 5412
Size: 32 5420
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5452
XbaI T'CTAG_A
Cuts at: 2788 2788
Size: 5452
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5452
XmaI C'CCGG_G
Cuts at: 1870 2777 1870
Size: 907 4545
XmnI GAAnn'nnTTC
Cuts at: 3581 3581
Size: 5452
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3260 276
Size: 53 83 186 936 1726 2468
Fragments arranged by size:
2468 1726 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI AvrII BaeI BamHI BanI BanII BbsI
BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI
BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI
BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI
PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI BbeI BbvCI BfrBI BplI
BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PpuMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI