Restriction map for
pFN21AB0959
(Circular) (Six-base) MAPSORT of: pFN21AB0959.seq Check: 8664 from: 1 to: 5275
pFN21AB0959 5275 bp
With 182 enzymes: SgfI *
April 15, 2010 09:34 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3085 278
Size: 53 83 186 936 1549 2468
Fragments arranged by size:
2468 1549 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2618 1937
Size: 681 4594
Acc65I G'GTAC_C
Cuts at: 2596 2596
Size: 5275
AclI AA'CG_TT
Cuts at: 1563 3402 3775 1563
Size: 1839 373 3063
Fragments arranged by size:
3063 1839 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3338 4722 4990 1632
Size: 1706 1384 268 1917
Fragments arranged by size:
1917 1706 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5078
AflIII A'CryG_T
Cuts at: 1203 4174 5151 1203
Size: 2971 977 1327
Fragments arranged by size:
2971 1327 977
AgeI A'CCGG_T
Cuts at: 4106 4106
Size: 5275
AhdI GACnn_n'nnGTC
Cuts at: 4004 4004
Size: 5275
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5275
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5275
AlwNI CAG_nnn'CTG
Cuts at: 2245 2305 2437 2470 2563 3018 4590 2245
Size: 60 132 33 93 455 1572 2930
Fragments arranged by size:
2930 1572 455 132 93 60 33
ApaLI G'TGCA_C
Cuts at: 2351 3332 4488 2351
Size: 981 1156 3138
Fragments arranged by size:
3138 1156 981
ApoI r'AATT_y
Cuts at: 1493 2584 2810 2962 5071 1493
Size: 1091 226 152 2109 1697
Fragments arranged by size:
2109 1697 1091 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3829 160
Size: 872 2797 1606
Fragments arranged by size:
2797 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
AvaI C'yCGr_G
Cuts at: 1870 1943 2600 1870
Size: 73 657 4545
Fragments arranged by size:
4545 657 73
BamHI G'GATC_C
Cuts at: 2605 2972 2605
Size: 367 4908
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2024 2230 2596 4051 618
Size: 325 217 627 237 206 366 1455 1842
Fragments arranged by size:
1842 1455 627 366 325 237 217 206
BanII G_rGCy'C
Cuts at: 1391 2594 1391
Size: 1203 4072
BbeI G_GCGC'C
Cuts at: 2234 2234
Size: 5275
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4304
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3466 3500 1903
Size: 34 1529 34 3678
Fragments arranged by size:
3678 1529 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3167 4377 3167
Size: 1210 4065
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5275
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2289 2428 3886
Size: 107 122 71 631 605 617 139 1458
Cuts at: 3886 136
Size: 1525
Fragments arranged by size:
1525 1458 631 617 605 139 122 107
71
BglII A'GATC_T
Cuts at: 5270 5270
Size: 5275
BlpI GC'TnA_GC
Cuts at: 2692 2692
Size: 5275
Bme1580I G_kGCm'C
Cuts at: 1790 2027 2355 2492 3336 4492 1790
Size: 237 328 137 844 1156 2573
Fragments arranged by size:
2573 1156 844 328 237 137
BmgBI CAC'GTC
Cuts at: 1318 2064 1318
Size: 746 4529
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3006 3964 442
Size: 416 53 83 399 24 1589 958 1753
Fragments arranged by size:
1753 1589 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5275
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2492 3935 1239
Size: 1253 1443 2579
Fragments arranged by size:
2579 1443 1253
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3400 4265 4563 3400
Size: 865 298 4112
Fragments arranged by size:
4112 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3938 882
Size: 617 2439 2219
Fragments arranged by size:
2439 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2452 3066 493
Size: 711 1248 614 2702
Fragments arranged by size:
2702 1248 711 614
BsaBI GATnn'nnATC
Cuts at: 5269 5269
Size: 5275
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2231 2519 3082 3464
Size: 53 83 186 936 698 288 563 382
Cuts at: 3464 4099 275
Size: 635 1451
Fragments arranged by size:
1451 936 698 635 563 382 288 186
83 53
BsaWI w'CCGG_w
Cuts at: 2340 3708 4106 4380 4527 4938 2340
Size: 1368 398 274 147 411 2677
Fragments arranged by size:
2677 1368 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2165 2195 1178
Size: 30 165 30 762 30 4258
Fragments arranged by size:
4258 762 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2095 1186
Size: 909 4366
BseYI C'CCAG_C
Cuts at: 2413 2485 4478 4974 2413
Size: 72 1993 496 2714
Fragments arranged by size:
2714 1993 496 72
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2258 1163
Size: 573 522 4180
Fragments arranged by size:
4180 573 522
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2725 3486 4514 1540
Size: 275 186 724 761 1028 2301
Fragments arranged by size:
2301 1028 761 724 275 186
BsiHKAI G_wGCw'C
Cuts at: 2348 2355 3336 3421 4492 2348
Size: 7 981 85 1071 3131
Fragments arranged by size:
3131 1071 981 85 7
BsmI GAATG_Cn'
Cuts at: 2786 2879 2786
Size: 93 5182
BsmBI CGTCTCn'nnnn_
Cuts at: 2510 2510
Size: 5275
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2027 2348 2355 2492 2594 3336 3421
Size: 399 237 321 7 137 102 742 85
Cuts at: 3421 4492 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 321 237 137 102
85 7
BspEI T'CCGG_A
Cuts at: 4938 4938
Size: 5275
BspHI T'CATG_A
Cuts at: 3164 4894 3164
Size: 1730 3545
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2313 2630 844
Size: 1469 317 3489
Fragments arranged by size:
3489 1469 317
BsrBI CCG'CTC
Cuts at: 1394 1823 3162 1394
Size: 429 1339 3507
Fragments arranged by size:
3507 1339 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3770 3944 65
Size: 1183 2522 174 1396
Fragments arranged by size:
2522 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2233 2444 3919 4106 1700
Size: 110 423 211 1475 187 2869
Fragments arranged by size:
2869 1475 423 211 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5275
BssHII G'CGCG_C
Cuts at: 1925 2333 1925
Size: 408 4867
BssSI C'ACGA_G
Cuts at: 2043 3335 4347 2043
Size: 1292 1012 2971
Fragments arranged by size:
2971 1292 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2437 794
Size: 1643 3632
BstBI TT'CG_AA
Cuts at: 4079 4079
Size: 5275
BstEII G'GTnAC_C
Cuts at: 1184 2359 1184
Size: 1175 4100
BstYI r'GATC_y
Cuts at: 1972 2605 2972 3357 3374 4826 4912 4924 5270
Size: 633 367 385 17 1452 86 12 346
Cuts at: 5270 1972
Size: 1977
Fragments arranged by size:
1977 1452 633 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2267 2267
Size: 5275
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3784
Fragments arranged by size:
3784 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4536
Fragments arranged by size:
4536 683 56
BtsI GCAGTG_nn'
Cuts at: 2791 3585 3605 2791
Size: 794 20 4461
Fragments arranged by size:
4461 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5275
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5240
DraI TTT'AAA
Cuts at: 2579 2579
Size: 5275
DraIII CAC_nnn'GTG
Cuts at: 2359 2359
Size: 5275
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4282 809
Size: 507 2966 1802
Fragments arranged by size:
2966 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2446 2722 3611
Size: 54 1425 50 275 18 616 276 889
Cuts at: 3611 5240 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 616 276 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2722 1537
Size: 275 910 4090
Fragments arranged by size:
4090 910 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2093 3205 1353
Size: 740 1112 3423
Fragments arranged by size:
3423 1112 740
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3862 4236 4382 387
Size: 1064 138 2273 374 146 1280
Fragments arranged by size:
2273 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2492 3338 3935 4722 4990 1239
Size: 393 860 846 597 787 268 1524
Fragments arranged by size:
1524 860 846 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2031 2052 2213 2242 2272 2031
Size: 21 161 29 30 5034
Fragments arranged by size:
5034 161 30 29 21
EcoRI G'AATT_C
Cuts at: 2584 2962 2584
Size: 378 4897
FspI TGC'GCA
Cuts at: 2309 2456 3781 2309
Size: 147 1325 3803
Fragments arranged by size:
3803 1325 147
HaeII r_GCGC'y
Cuts at: 1678 2234 4422 1678
Size: 556 2188 2531
Fragments arranged by size:
2531 2188 556
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3916 3948 3990 4022 1373
Size: 32 135 32 2344 32 42 32 2626
Fragments arranged by size:
2626 2344 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2619 2865 669
Size: 988 281 681 246 3079
Fragments arranged by size:
3079 988 681 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5275
HpaI GTT'AAC
Cuts at: 2865 2865
Size: 5275
KasI G'GCGC_C
Cuts at: 2230 2230
Size: 5275
KpnI G_GTAC'C
Cuts at: 2600 2600
Size: 5275
MfeI C'AATT_G
Cuts at: 2874 2874
Size: 5275
MluI A'CGCG_T
Cuts at: 5151 5151
Size: 5275
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4389 4573 1305
Size: 3084 184 2007
Fragments arranged by size:
3084 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3453
Fragments arranged by size:
3453 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3233 3592 3751 518
Size: 648 2067 359 159 2042
Fragments arranged by size:
2067 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2313 2437 2563 2691 3368 4516 4761 1606
Size: 707 124 126 128 677 1148 245 2120
Fragments arranged by size:
2120 1148 707 677 245 128 126 124
NaeI GCC'GGC
Cuts at: 2446 2446
Size: 5275
NarI GG'CG_CC
Cuts at: 2231 2231
Size: 5275
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3784
Fragments arranged by size:
3784 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5275
NgoMIV G'CCGG_C
Cuts at: 2444 2444
Size: 5275
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5275
NotI GC'GGCC_GC
Cuts at: 2722 2722
Size: 5275
NspI r_CATG'y
Cuts at: 1132 1229 2283 2633 4178 1132
Size: 97 1054 350 1545 2229
Fragments arranged by size:
2229 1545 1054 350 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5275
PciI A'CATG_T
Cuts at: 4174 4174
Size: 5275
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5275
PmeI GTTT'AAAC
Cuts at: 2579 2579
Size: 5275
PmlI CAC'GTG
Cuts at: 2452 2452
Size: 5275
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3344 3376 4857 4889 3344
Size: 32 1481 32 3730
Fragments arranged by size:
3730 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2031 2272 2031
Size: 241 5034
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5275
PsiI TTA'TAA
Cuts at: 2845 2845
Size: 5275
PstI C_TGCA'G
Cuts at: 830 2466 2508 2627 830
Size: 1636 42 119 3478
Fragments arranged by size:
3478 1636 119 42
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5275
PvuII CAG'CTG
Cuts at: 2563 2563
Size: 5275
SalI G'TCGA_C
Cuts at: 1936 2617 1936
Size: 681 4594
SanDI GG'GwC_CC
Cuts at: 2272 2272
Size: 5275
SbfI CC_TGCA'GG
Cuts at: 2466 2627 2466
Size: 161 5114
ScaI AGT'ACT
Cuts at: 3523 5235 3523
Size: 1712 3563
SfcI C'TryA_G
Cuts at: 826 1045 2462 2504 2623 3758 4439 4630 826
Size: 219 1417 42 119 1135 681 191 1471
Fragments arranged by size:
1471 1417 1135 681 219 191 119 42
SfoI GGC'GCC
Cuts at: 2232 2232
Size: 5275
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5275
SgrAI Cr'CCGG_yG
Cuts at: 1700 2233 1700
Size: 533 4742
SmaI CCC'GGG
Cuts at: 1872 2602 1872
Size: 730 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3379 4280 4542 820
Size: 197 926 1436 901 262 1553
Fragments arranged by size:
1553 1436 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3066 493
Size: 2573 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5275
SphI G_CATG'C
Cuts at: 1132 2633 1132
Size: 1501 3774
SspI AAT'ATT
Cuts at: 5 52 3199 5
Size: 47 3147 2081
Fragments arranged by size:
3147 2081 47
StuI AGG'CCT
Cuts at: 1517 2369 1517
Size: 852 4423
StyI C'CwwG_G
Cuts at: 513 1065 2004 2714 513
Size: 552 939 710 3074
Fragments arranged by size:
3074 939 710 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3302 3319 3472 3657 4102 325
Size: 1255 1722 17 153 185 445 1498
Fragments arranged by size:
1722 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3521 5233 96
Size: 274 80 33 51 1443 1544 1712 138
Fragments arranged by size:
1712 1544 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2048 2080 5235 5267 2048
Size: 32 3155 32 2056
Fragments arranged by size:
3155 2056 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5275
XbaI T'CTAG_A
Cuts at: 2611 2611
Size: 5275
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5275
XmaI C'CCGG_G
Cuts at: 1870 2600 1870
Size: 730 4545
XmnI GAAnn'nnTTC
Cuts at: 3404 3404
Size: 5275
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3083 276
Size: 53 83 186 936 1549 2468
Fragments arranged by size:
2468 1549 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI
BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI
EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KasI KpnI MfeI MluI MmeI
MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV
NheI NotI NspI PasI PciI PflMI PmeI PmlI
PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI
SanDI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbvCI
BfrBI BplI Bpu10I BsiWI BstXI BstZ17I EcoICRI EcoNI
EcoRV FalI FseI FspAI NruI NsiI PacI PfoI
PspOMI PspXI PsrI RsrII SacI SacII SapI SexAI
SfiI SrfI SwaI XcmI