FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1970, 523 aa
  1>>>pF1KSDA1970 523 - 523 aa - 523 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6994+/-0.000803; mu= 16.6007+/- 0.049
 mean_var=76.0000+/-15.142, 0's: 0 Z-trim(108.1): 14  B-trim: 0 in 0/53
 Lambda= 0.147119
 statistics sampled from 9978 (9985) to 9978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.307), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(32554)
CCDS42132.1 EARS2 gene_id:124454|Hs108|chr16       ( 523) 3484 749.0 3.1e-216
CCDS76844.1 EARS2 gene_id:124454|Hs108|chr16       ( 534) 3312 712.5  3e-205


>>CCDS42132.1 EARS2 gene_id:124454|Hs108|chr16            (523 aa)
 initn: 3484 init1: 3484 opt: 3484  Z-score: 3995.7  bits: 749.0 E(32554): 3.1e-216
Smith-Waterman score: 3484; 100.0% identity (100.0% similar) in 523 aa overlap (1-523:1-523)

               10        20        30        40        50        60
pF1KSD MAALLRRLLQRERPSAASGRPVGRREANLGTDAGVAVRVRFAPSPTGFLHLGGLRTALYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAALLRRLLQRERPSAASGRPVGRREANLGTDAGVAVRVRFAPSPTGFLHLGGLRTALYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YIFAKKYQGSFILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YIFAKKYQGSFILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LELYAQATEALLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LELYAQATEALLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQKLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KDPKPAIRFRLEQVVPAFQDLVYGWNRHEVASVEGDPVIMKSDGFPTYHLACVVDDHHMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KDPKPAIRFRLEQVVPAFQDLVYGWNRHEVASVEGDPVIMKSDGFPTYHLACVVDDHHMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ISHVLRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ISHVLRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFAAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GFLPDSLLDIITNCGSGFAENQMGRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GFLPDSLLDIITNCGSGFAENQMGRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RLVSNESQRRQLVGKLQVLVEEAFGCQLQNRDVLNPVYVERILLLRQGHICRLQDLVSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RLVSNESQRRQLVGKLQVLVEEAFGCQLQNRDVLNPVYVERILLLRQGHICRLQDLVSPV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD YSYLWTRPAVGRAQLDAISEKVDVIAKRVLGLLERSSMSLTQDMLNGELKKLSEGLEGTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YSYLWTRPAVGRAQLDAISEKVDVIAKRVLGLLERSSMSLTQDMLNGELKKLSEGLEGTK
              430       440       450       460       470       480

              490       500       510       520   
pF1KSD YSNVMKLLRMALSGQQQGPPVAEMMLALGPKEVRERIQKVVSS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS42 YSNVMKLLRMALSGQQQGPPVAEMMLALGPKEVRERIQKVVSS
              490       500       510       520   

>>CCDS76844.1 EARS2 gene_id:124454|Hs108|chr16            (534 aa)
 initn: 3311 init1: 3311 opt: 3312  Z-score: 3798.2  bits: 712.5 E(32554): 3e-205
Smith-Waterman score: 3312; 99.6% identity (99.6% similar) in 500 aa overlap (1-498:1-500)

               10        20        30        40        50        60
pF1KSD MAALLRRLLQRERPSAASGRPVGRREANLGTDAGVAVRVRFAPSPTGFLHLGGLRTALYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAALLRRLLQRERPSAASGRPVGRREANLGTDAGVAVRVRFAPSPTGFLHLGGLRTALYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YIFAKKYQGSFILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YIFAKKYQGSFILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LELYAQATEALLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LELYAQATEALLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQKLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KDPKPAIRFRLEQVVPAFQDLVYGWNRHEVASVEGDPVIMKSDGFPTYHLACVVDDHHMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KDPKPAIRFRLEQVVPAFQDLVYGWNRHEVASVEGDPVIMKSDGFPTYHLACVVDDHHMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ISHVLRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ISHVLRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFAAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GFLPDSLLDIITNCGSGFAENQMGRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GFLPDSLLDIITNCGSGFAENQMGRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RLVSNESQRRQLVGKLQVLVEEAFGCQLQNRDVLNPVYVERILLLRQGHICRLQDLVSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RLVSNESQRRQLVGKLQVLVEEAFGCQLQNRDVLNPVYVERILLLRQGHICRLQDLVSPV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD YSYLWTRPAVGRAQLDAISEKVDVIAKRVLGLLERSSMSLTQDMLNGELKKLSEGLEGTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YSYLWTRPAVGRAQLDAISEKVDVIAKRVLGLLERSSMSLTQDMLNGELKKLSEGLEGTK
              430       440       450       460       470       480

              490         500       510       520            
pF1KSD YSNVMKLLRMALSGQQ--QGPPVAEMMLALGPKEVRERIQKVVSS         
       ::::::::::::::::  ::                                  
CCDS76 YSNVMKLLRMALSGQQVRQGHGLDCSLEPLIDPLNLHFLAGTELNIEYTKVNET
              490       500       510       520       530    




523 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:53:19 2016 done: Thu Nov  3 07:53:19 2016
 Total Scan time:  3.590 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]