FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0070, 597 aa
  1>>>pF1KSDA0070 597 - 597 aa - 597 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2721+/-0.000979; mu= 13.8164+/- 0.059
 mean_var=79.7825+/-15.768, 0's: 0 Z-trim(105.8): 15  B-trim: 7 in 1/50
 Lambda= 0.143589
 statistics sampled from 8591 (8599) to 8591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS10923.1 KARS gene_id:3735|Hs108|chr16          ( 597) 3958 829.9       0
CCDS45532.1 KARS gene_id:3735|Hs108|chr16          ( 625) 3835 804.5       0


>>CCDS10923.1 KARS gene_id:3735|Hs108|chr16               (597 aa)
 initn: 3958 init1: 3958 opt: 3958  Z-score: 4431.2  bits: 829.9 E(32554):    0
Smith-Waterman score: 3958; 99.8% identity (100.0% similar) in 597 aa overlap (1-597:1-597)

               10        20        30        40        50        60
pF1KSD MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
              490       500       510       520       530       540

              550       560       570       580       590       
pF1KSD LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS10 LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGTSV
              550       560       570       580       590       

>>CCDS45532.1 KARS gene_id:3735|Hs108|chr16               (625 aa)
 initn: 3835 init1: 3835 opt: 3835  Z-score: 4293.2  bits: 804.5 E(32554):    0
Smith-Waterman score: 3835; 99.5% identity (100.0% similar) in 578 aa overlap (20-597:48-625)

                          10        20        30        40         
pF1KSD            MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLS
                                     ..::::::::::::::::::::::::::::
CCDS45 SWAEWGHRELRLGQLAPFTAPHKDKSFSDQRSELKRRLKAEKKVAEKEAKQKELSEKQLS
        20        30        40        50        60        70       

      50        60        70        80        90       100         
pF1KSD QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
        80        90       100       110       120       130       

     110       120       130       140       150       160         
pF1KSD QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
       140       150       160       170       180       190       

     170       180       190       200       210       220         
pF1KSD IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
       200       210       220       230       240       250       

     230       240       250       260       270       280         
pF1KSD RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
       260       270       280       290       300       310       

     290       300       310       320       330       340         
pF1KSD LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
       320       330       340       350       360       370       

     350       360       370       380       390       400         
pF1KSD LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
       380       390       400       410       420       430       

     410       420       430       440       450       460         
pF1KSD ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
       440       450       460       470       480       490       

     470       480       490       500       510       520         
pF1KSD SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
       500       510       520       530       540       550       

     530       540       550       560       570       580         
pF1KSD DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
       560       570       580       590       600       610       

     590       
pF1KSD STTVGSSV
       :::::.::
CCDS45 STTVGTSV
       620     




597 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:48:10 2016 done: Wed Nov  2 23:48:11 2016
 Total Scan time:  2.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]