FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0065, 184 aa
  1>>>pF1KF0065 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6759+/-0.000258; mu= 12.9942+/- 0.016
 mean_var=99.7070+/-20.229, 0's: 0 Z-trim(122.7): 4  B-trim: 387 in 1/54
 Lambda= 0.128443
 statistics sampled from 41164 (41168) to 41164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.483), width:  16
 Scan time:  6.630

The best scores are:                                      opt bits E(85289)
NP_001003940 (OMIM: 606266) bcl-2-modifying factor ( 184) 1306 251.0 7.7e-67
NP_277038 (OMIM: 606266) bcl-2-modifying factor is ( 184) 1306 251.0 7.7e-67
NP_001003942 (OMIM: 606266) bcl-2-modifying factor ( 163)  925 180.4 1.3e-45
NP_001003943 (OMIM: 606266) bcl-2-modifying factor ( 129)  692 137.1 1.1e-32


>>NP_001003940 (OMIM: 606266) bcl-2-modifying factor iso  (184 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1320.9  bits: 251.0 E(85289): 7.7e-67
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
              130       140       150       160       170       180

           
pF1KF0 AGPR
       ::::
NP_001 AGPR
           

>>NP_277038 (OMIM: 606266) bcl-2-modifying factor isofor  (184 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1320.9  bits: 251.0 E(85289): 7.7e-67
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
              130       140       150       160       170       180

           
pF1KF0 AGPR
       ::::
NP_277 AGPR
           

>>NP_001003942 (OMIM: 606266) bcl-2-modifying factor iso  (163 aa)
 initn: 925 init1: 925 opt: 925  Z-score: 940.1  bits: 180.4 E(85289): 1.3e-45
Smith-Waterman score: 1110; 88.6% identity (88.6% similar) in 184 aa overlap (1-184:1-163)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       ::::::::::                     :::::::::::::::::::::::::::::
NP_001 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG
              130                            140       150         

           
pF1KF0 AGPR
       ::::
NP_001 AGPR
     160   

>>NP_001003943 (OMIM: 606266) bcl-2-modifying factor iso  (129 aa)
 initn: 698 init1: 682 opt: 692  Z-score: 708.1  bits: 137.1 E(85289): 1.1e-32
Smith-Waterman score: 692; 80.0% identity (85.4% similar) in 130 aa overlap (1-130:1-125)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       :::::::::::::::::::::::::::::::::::::. :      : :  .. :     
NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPA-----EPKSCVVADPPLPAQ
               70        80        90       100            110     

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       :  .:... :                                                  
NP_001 PCFEWRREQERGRP                                              
         120                                                       




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:14:13 2016 done: Mon Nov  7 04:14:13 2016
 Total Scan time:  6.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]