FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0065, 184 aa
  1>>>pF1KF0065 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7334+/-0.000595; mu= 12.6111+/- 0.036
 mean_var=94.3188+/-19.050, 0's: 0 Z-trim(115.5): 5  B-trim: 247 in 1/49
 Lambda= 0.132061
 statistics sampled from 16007 (16012) to 16007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS10052.1 BMF gene_id:90427|Hs108|chr15          ( 184) 1306 257.6 3.1e-69
CCDS45223.1 BMF gene_id:90427|Hs108|chr15          ( 163)  925 185.0   2e-47
CCDS32196.1 BMF gene_id:90427|Hs108|chr15          ( 129)  692 140.5 3.9e-34


>>CCDS10052.1 BMF gene_id:90427|Hs108|chr15               (184 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1356.5  bits: 257.6 E(32554): 3.1e-69
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
              130       140       150       160       170       180

           
pF1KF0 AGPR
       ::::
CCDS10 AGPR
           

>>CCDS45223.1 BMF gene_id:90427|Hs108|chr15               (163 aa)
 initn: 925 init1: 925 opt: 925  Z-score: 964.9  bits: 185.0 E(32554): 2e-47
Smith-Waterman score: 1110; 88.6% identity (88.6% similar) in 184 aa overlap (1-184:1-163)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       ::::::::::                     :::::::::::::::::::::::::::::
CCDS45 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG
              130                            140       150         

           
pF1KF0 AGPR
       ::::
CCDS45 AGPR
     160   

>>CCDS32196.1 BMF gene_id:90427|Hs108|chr15               (129 aa)
 initn: 698 init1: 682 opt: 692  Z-score: 726.4  bits: 140.5 E(32554): 3.9e-34
Smith-Waterman score: 692; 80.0% identity (85.4% similar) in 130 aa overlap (1-130:1-125)

               10        20        30        40        50        60
pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
       :::::::::::::::::::::::::::::::::::::. :      : :  .. :     
CCDS32 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPA-----EPKSCVVADPPLPAQ
               70        80        90       100            110     

              130       140       150       160       170       180
pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG
       :  .:... :                                                  
CCDS32 PCFEWRREQERGRP                                              
         120                                                       




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:14:12 2016 done: Mon Nov  7 04:14:12 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]