Result of FASTA (omim) for
pFN21AE9694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9694, 316 aa
1>>>pF1KE9694 316 - 316 aa - 316 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7378+/-0.000371; mu= 5.4343+/- 0.023
mean_var=195.0379+/-38.117, 0's: 0 Z-trim(118.9): 28 B-trim: 279 in 2/57
Lambda= 0.091836
statistics sampled from 32351 (32380) to 32351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.38), width: 16
Scan time: 7.100
The best scores are: opt bits E(85289)
NP_150628 (OMIM: 614718) small kinetochore-associa ( 316) 1990 275.9 7.6e-74
NP_001136233 (OMIM: 614718) small kinetochore-asso ( 286) 1731 241.5 1.5e-63
NP_001136234 (OMIM: 614718) small kinetochore-asso ( 241) 1460 205.5 8.7e-53
>>NP_150628 (OMIM: 614718) small kinetochore-associated (316 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 1446.7 bits: 275.9 E(85289): 7.6e-74
Smith-Waterman score: 1990; 98.7% identity (99.1% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_150 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
:::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
NP_150 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_150 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
250 260 270 280 290 300
310
pF1KE9 NDLTTALKEMEQLLEM
::::::::::::::::
NP_150 NDLTTALKEMEQLLEM
310
>>NP_001136233 (OMIM: 614718) small kinetochore-associat (286 aa)
initn: 1731 init1: 1731 opt: 1731 Z-score: 1261.8 bits: 241.5 E(85289): 1.5e-63
Smith-Waterman score: 1731; 98.5% identity (98.9% similar) in 274 aa overlap (1-274:1-274)
10 20 30 40 50 60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
:::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
NP_001 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
::::::::::::::::::::::::::::::::::
NP_001 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQIAWMNHGILHQM
250 260 270 280
310
pF1KE9 NDLTTALKEMEQLLEM
>>NP_001136234 (OMIM: 614718) small kinetochore-associat (241 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 1068.7 bits: 205.5 E(85289): 8.7e-53
Smith-Waterman score: 1460; 98.7% identity (98.7% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
:::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
NP_001 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
NP_001 F
316 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:36:44 2016 done: Tue Nov 8 10:36:45 2016
Total Scan time: 7.100 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]