FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9692, 637 aa
  1>>>pF1KE9692 637 - 637 aa - 637 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3636+/-0.000893; mu= -1.9519+/- 0.053
 mean_var=311.0825+/-62.642, 0's: 0 Z-trim(115.9): 57  B-trim: 0 in 0/53
 Lambda= 0.072717
 statistics sampled from 16426 (16475) to 16426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.506), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(32554)
CCDS12299.1 C19orf57 gene_id:79173|Hs108|chr19     ( 637) 4416 476.9 3.6e-134


>>CCDS12299.1 C19orf57 gene_id:79173|Hs108|chr19          (637 aa)
 initn: 4416 init1: 4416 opt: 4416  Z-score: 2522.2  bits: 476.9 E(32554): 3.6e-134
Smith-Waterman score: 4416; 99.8% identity (100.0% similar) in 637 aa overlap (1-637:1-637)

               10        20        30        40        50        60
pF1KE9 MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 PGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 VVLEHREIADEPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQ
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 IQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEA
              550       560       570       580       590       600

              610       620       630       
pF1KE9 FKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL
       :::::::::::::::::::::::::::::::::::::
CCDS12 FKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL
              610       620       630       




637 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:43:12 2016 done: Tue Nov  8 10:43:13 2016
 Total Scan time:  3.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]