Result of FASTA (ccds) for
pFN21AE9685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9685, 311 aa
1>>>pF1KE9685 311 - 311 aa - 311 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4518+/-0.00078; mu= 11.1667+/- 0.047
mean_var=101.4772+/-20.090, 0's: 0 Z-trim(110.5): 51 B-trim: 3 in 1/53
Lambda= 0.127318
statistics sampled from 11600 (11651) to 11600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.358), width: 16
Scan time: 1.760
The best scores are: opt bits E(32554)
CCDS56456.1 KATNA1 gene_id:11104|Hs108|chr6 ( 311) 2052 386.9 1e-107
CCDS5217.1 KATNA1 gene_id:11104|Hs108|chr6 ( 491) 1119 215.7 5.9e-56
CCDS31956.1 KATNAL1 gene_id:84056|Hs108|chr13 ( 490) 866 169.2 5.7e-42
CCDS32828.1 KATNAL2 gene_id:83473|Hs108|chr18 ( 466) 589 118.3 1.1e-26
CCDS11983.1 VPS4B gene_id:9525|Hs108|chr18 ( 444) 536 108.6 9.3e-24
CCDS45517.1 VPS4A gene_id:27183|Hs108|chr16 ( 437) 533 108.0 1.4e-23
CCDS5510.1 FIGNL1 gene_id:63979|Hs108|chr7 ( 674) 520 105.7 1e-22
CCDS1779.1 SPAST gene_id:6683|Hs108|chr2 ( 584) 489 100.0 4.6e-21
CCDS1778.1 SPAST gene_id:6683|Hs108|chr2 ( 616) 489 100.0 4.9e-21
CCDS7386.1 ATAD1 gene_id:84896|Hs108|chr10 ( 361) 379 79.7 3.8e-15
CCDS9710.2 PSMC6 gene_id:5706|Hs108|chr14 ( 403) 371 78.2 1.1e-14
CCDS58062.1 NVL gene_id:4931|Hs108|chr1 ( 667) 363 76.9 4.8e-14
CCDS1542.1 NVL gene_id:4931|Hs108|chr1 ( 750) 363 76.9 5.3e-14
CCDS58063.1 NVL gene_id:4931|Hs108|chr1 ( 765) 363 76.9 5.4e-14
CCDS1541.1 NVL gene_id:4931|Hs108|chr1 ( 856) 363 77.0 5.9e-14
CCDS3730.1 SPATA5 gene_id:166378|Hs108|chr4 ( 893) 359 76.2 1e-13
CCDS58072.1 YME1L1 gene_id:10730|Hs108|chr10 ( 683) 356 75.6 1.2e-13
CCDS7151.1 YME1L1 gene_id:10730|Hs108|chr10 ( 716) 356 75.6 1.2e-13
CCDS7152.1 YME1L1 gene_id:10730|Hs108|chr10 ( 773) 356 75.6 1.3e-13
CCDS2221.2 FIGN gene_id:55137|Hs108|chr2 ( 759) 355 75.5 1.5e-13
CCDS81837.1 PSMC1 gene_id:5700|Hs108|chr14 ( 367) 349 74.2 1.7e-13
CCDS6573.1 VCP gene_id:7415|Hs108|chr9 ( 806) 354 75.3 1.8e-13
CCDS32139.1 PSMC1 gene_id:5700|Hs108|chr14 ( 440) 349 74.2 2e-13
CCDS56043.1 PSMC5 gene_id:5705|Hs108|chr17 ( 398) 347 73.8 2.4e-13
CCDS11645.1 PSMC5 gene_id:5705|Hs108|chr17 ( 406) 347 73.8 2.4e-13
CCDS7935.1 PSMC3 gene_id:5702|Hs108|chr11 ( 439) 344 73.3 3.8e-13
CCDS46076.1 PSMC4 gene_id:5704|Hs108|chr19 ( 387) 339 72.3 6.5e-13
CCDS12547.1 PSMC4 gene_id:5704|Hs108|chr19 ( 418) 339 72.4 6.9e-13
CCDS5731.1 PSMC2 gene_id:5701|Hs108|chr7 ( 433) 337 72.0 9.2e-13
CCDS4877.1 PEX6 gene_id:5190|Hs108|chr6 ( 980) 338 72.4 1.6e-12
CCDS64710.1 PEX1 gene_id:5189|Hs108|chr7 (1226) 338 72.5 1.9e-12
CCDS5627.1 PEX1 gene_id:5189|Hs108|chr7 (1283) 338 72.5 2e-12
CCDS11859.1 AFG3L2 gene_id:10939|Hs108|chr18 ( 797) 309 67.0 5.4e-11
CCDS46227.1 ATAD2B gene_id:54454|Hs108|chr2 (1458) 310 67.4 7.8e-11
CCDS10977.1 SPG7 gene_id:6687|Hs108|chr16 ( 795) 306 66.5 7.9e-11
>>CCDS56456.1 KATNA1 gene_id:11104|Hs108|chr6 (311 aa)
initn: 2052 init1: 2052 opt: 2052 Z-score: 2047.2 bits: 386.9 E(32554): 1e-107
Smith-Waterman score: 2052; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)
10 20 30 40 50 60
pF1KE9 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 VEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 SDPKSHGNRPSTTVRVHRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SDPKSHGNRPSTTVRVHRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 LLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 RGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKR
250 260 270 280 290 300
310
pF1KE9 IYIPLPSGMRP
:::::::::::
CCDS56 IYIPLPSGMRP
310
>>CCDS5217.1 KATNA1 gene_id:11104|Hs108|chr6 (491 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1118.1 bits: 215.7 E(32554): 5.9e-56
Smith-Waterman score: 1589; 77.8% identity (77.8% similar) in 343 aa overlap (1-267:1-343)
10 20 30 40 50 60
pF1KE9 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 VEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQY
70 80 90 100 110 120
130 140 150 160
pF1KE9 SDPKSHGNRPSTTVRVHRSSAQNVHNDRGKAVRCREKKEQNKGREEK-------------
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SDPKSHGNRPSTTVRVHRSSAQNVHNDRGKAVRCREKKEQNKGREEKNKSPAAVTEPETN
130 140 150 160 170 180
pF1KE9 ------------------------------------------------------------
CCDS52 KFDSTGYDKDLVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFKGIRR
190 200 210 220 230 240
170 180 190 200 210 220
pF1KE9 ---GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFY
250 260 270 280 290 300
230 240 250 260 270 280
pF1KE9 SPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATN
:::::::::::::::::::::::::::::::::::::::::::
CCDS52 SPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATN
310 320 330 340 350 360
290 300 310
pF1KE9 FPWDIDEALRRRLEKRIYIPLPSGMRP
CCDS52 FPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGAD
370 380 390 400 410 420
>>CCDS31956.1 KATNAL1 gene_id:84056|Hs108|chr13 (490 aa)
initn: 1233 init1: 863 opt: 866 Z-score: 866.9 bits: 169.2 E(32554): 5.7e-42
Smith-Waterman score: 934; 52.5% identity (65.8% similar) in 339 aa overlap (44-307:44-382)
20 30 40 50 60 70
pF1KE9 REYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEINVEAKHVKDIMKTL
.: .. ::::: ::. : ..::.:..::
CCDS31 REYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVSTL
20 30 40 50 60 70
80 90 100 110
pF1KE9 ESFKLDSTP-LKAAQHDLPASEGEVWSMPVPVERRPSPGPRK-----------------R
::::.:. : . .. .: : . :: :::.:.: : :. :
CCDS31 ESFKIDKPPDFPVSCQDEPFRDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKEMAGVGAR
80 90 100 110 120 130
120 130 140
pF1KE9 QSSQYSDPKSHGNRPSTT----VRVH------RSSAQNVHND------------------
. : :....:::. :.. :.. :. .:
CCDS31 GPVGRAHPISKSEKPSTSRDKDYRARGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEA
140 150 160 170 180 190
150 160 170
pF1KE9 -------RGKAVR------CREKKEQN--------------KG--REEKGVLMVGPPGTG
:. ... .: :. :: : ::::::::::::
CCDS31 LERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTG
200 210 220 230 240 250
180 190 200 210 220 230
pF1KE9 KTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSIC
::.::::::::: :::::::::::::::::::::::::::::::::.:.:::::::::::
CCDS31 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSIC
260 270 280 290 300 310
240 250 260 270 280 290
pF1KE9 SRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLE
::::::.:::::::::.:::.:::::::. ::::::::::::::::::::::::::::::
CCDS31 SRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLE
320 330 340 350 360 370
300 310
pF1KE9 KRIYIPLPSGMRP
::::::::.
CCDS31 KRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMR
380 390 400 410 420 430
>>CCDS32828.1 KATNAL2 gene_id:83473|Hs108|chr18 (466 aa)
initn: 596 init1: 392 opt: 589 Z-score: 592.3 bits: 118.3 E(32554): 1.1e-26
Smith-Waterman score: 589; 63.6% identity (88.8% similar) in 143 aa overlap (167-307:216-352)
140 150 160 170 180 190
pF1KE9 HRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFN
::.:. ::::::::::::::::::::::::
CCDS32 GLDAAKQLVKEAVVYPIRYPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFN
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE9 VSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSE--EHEASRRVK
.:.::..::.::.::::::.:::.::...:.:::.::..:. :.:::. :::.: :.:
CCDS32 ISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMK
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE9 AELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSGMRP
.::::::::. ....: .:.::::.:.::..: :. ::::::: . :::
CCDS32 TELLVQMDGL---ARSED---LVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAM
310 320 330 340 350
CCDS32 IYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQ
360 370 380 390 400 410
>>CCDS11983.1 VPS4B gene_id:9525|Hs108|chr18 (444 aa)
initn: 386 init1: 216 opt: 536 Z-score: 540.0 bits: 108.6 E(32554): 9.3e-24
Smith-Waterman score: 550; 38.9% identity (66.1% similar) in 301 aa overlap (20-306:25-301)
10 20 30 40 50
pF1KE9 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQV
:::. :. :: ... .:. :: . . ...
CCDS11 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY---FLHVVK---YEAQGDKA
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 WQEINVEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKR
: : .. . : . :. . .. : ::. :..::. : :.... . . .
CCDS11 KQSIRAKCTEYLDRAEKLKEYLKNKE--KKAQK--PVKEGQ----PSPADEKGNDSDGEG
60 70 80 90 100
120 130 140 150 160
pF1KE9 QSSQYSDP--KSHGNRPSTTVRVHRSSAQ--NVHNDRGKAVRCREK-----KEQN--KGR
.:. :: :. :. . .. ..: ... .: . .: .: : . :.
CCDS11 ESD---DPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE9 EE--KGVLMVGPPGTGKTLLAKAVATECK-TTFFNVSSSTLTSKYRGESEKLVRLLFEMA
. .:.:. :::::::. :::::::: . .:::..::: :.::. :::::::. ::..:
CCDS11 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE9 RFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLA
: .:. ::::::::.:. : . .: ::.::.:.:.::::.::: .:: ..::.
CCDS11 RENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVG--VDNDG----ILVLG
230 240 250 260 270
290 300 310
pF1KE9 ATNFPWDIDEALRRRLEKRIYIPLPSGMRP
:::.:: .: :.:::.:::::::::
CCDS11 ATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGY
280 290 300 310 320 330
>>CCDS45517.1 VPS4A gene_id:27183|Hs108|chr16 (437 aa)
initn: 539 init1: 222 opt: 533 Z-score: 537.1 bits: 108.0 E(32554): 1.4e-23
Smith-Waterman score: 534; 37.6% identity (65.1% similar) in 295 aa overlap (21-306:24-294)
10 20 30 40 50
pF1KE9 MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQ
::. :. :: ... .:...: ..: .. .
CCDS45 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEY---FLHAIKYEAHSDKAKESIR
10 20 30 40 50
60 70 80 90 100 110
pF1KE9 EINVE----AKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPR
:. :...:: ... : : . :.: : . .:... . .:.
CCDS45 AKCVQYLDRAEKLKDYLRSKE--KHGKKPVKENQSEGKGSDSD----------SEGDNPE
60 70 80 90 100
120 130 140 150 160
pF1KE9 KRQSSQYSDPKSHGNRPSTTVRVHRSSAQNVHNDRGKAVRCREKKEQN--KGREE--KGV
:.. .. ..:. .: . .. . .. : . : . :.. .:.
CCDS45 KKKLQEQLMGAVVMEKPN--IRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGI
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE9 LMVGPPGTGKTLLAKAVATECK-TTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPAT
:. :::::::. :::::::: . .:::.:::: : ::. :::::::. :::.:: ..:.
CCDS45 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE9 IFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWD
:::::.::.:. :. .: ::.::.:.:.::::.:::. :.: . .::.:::.::
CCDS45 IFIDEVDSLCGSRNENES-EAARRIKTEFLVQMQGVGN---NNDGT---LVLGATNIPWV
230 240 250 260 270
290 300 310
pF1KE9 IDEALRRRLEKRIYIPLPSGMRP
.: :.:::.:::::::::
CCDS45 LDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISI
280 290 300 310 320 330
>>CCDS5510.1 FIGNL1 gene_id:63979|Hs108|chr7 (674 aa)
initn: 538 init1: 324 opt: 520 Z-score: 521.4 bits: 105.7 E(32554): 1e-22
Smith-Waterman score: 520; 57.9% identity (82.9% similar) in 140 aa overlap (167-306:435-568)
140 150 160 170 180 190
pF1KE9 HRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFN
::.:. :::::::::..: .:.. .:::.
CCDS55 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFS
410 420 430 440 450 460
200 210 220 230 240 250
pF1KE9 VSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAE
.:.:.::::. ::.::.:: :: .:: .::.::::::::. :.:: .: ::.:::.:.:
CCDS55 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-HESSRRIKTE
470 480 490 500 510 520
260 270 280 290 300 310
pF1KE9 LLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSGMRP
.:::.::. .::. ..:..::: : .:::: :::: ::.:::::
CCDS55 FLVQLDGATTSSEDR-----ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVI
530 540 550 560 570
CCDS55 NLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRP
580 590 600 610 620 630
>>CCDS1779.1 SPAST gene_id:6683|Hs108|chr2 (584 aa)
initn: 479 init1: 295 opt: 489 Z-score: 491.6 bits: 100.0 E(32554): 4.6e-21
Smith-Waterman score: 489; 55.6% identity (81.0% similar) in 142 aa overlap (167-307:344-478)
140 150 160 170 180 190
pF1KE9 HRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFN
.:.:. ::::.:::.::::::.: ..::::
CCDS17 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN
320 330 340 350 360 370
200 210 220 230 240 250
pF1KE9 VSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSI-CSRRGTSEEHEASRRVKA
.:...::::: ::.::::: :: .:: .:. :::::.::. : :: ::.::::.:.
CCDS17 ISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERR--EGEHDASRRLKT
380 390 400 410 420 430
260 270 280 290 300 310
pF1KE9 ELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSGMRP
:.:...::: : .:: :.:..::: : ..:::. ::. ::.:. ::.
CCDS17 EFLIEFDGV--QSAGDD---RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLL
440 450 460 470 480
CCDS17 KNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMR
490 500 510 520 530 540
>>CCDS1778.1 SPAST gene_id:6683|Hs108|chr2 (616 aa)
initn: 479 init1: 295 opt: 489 Z-score: 491.2 bits: 100.0 E(32554): 4.9e-21
Smith-Waterman score: 495; 32.6% identity (61.4% similar) in 337 aa overlap (9-307:184-510)
10 20 30
pF1KE9 MSLLMISENVKLAREY-ALLGNYDSAMVYYQGVLDQMN
:. .:.. :: ... .. . .. : .:
CCDS17 EELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQLLEKMQPVLPFSKSQTDVYN
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE9 KYL-YSVKDTYLQQKWQQVWQEINVEAKHVKDIMKTLESFKLDSTPLKAAQHDLPASEGE
. .. .::.. : .. . .. ... .. .: :. : ...: :. :
CCDS17 DSTNLACRNGHLQSESGAVPKRKDPLTHTSNSLPRSKTVMKTGSAGL-SGHHRAPSYSG-
220 230 240 250 260 270
100 110 120 130 140
pF1KE9 VWSMPVPVERRPSPGPRKRQSSQYSDPKSHGNRPSTTVRVH------RSSAQNVHN----
:: :.. .:.: .... .. .. . :.:..: . :. .:. :
CCDS17 -LSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTATRKKKDLKNFRNVDSNLANLIMN
280 290 300 310 320 330
150 160 170 180
pF1KE9 ---DRGKAVRCREKKEQNKGREE----------------------KGVLMVGPPGTGKTL
: : ::. . :. ... .:.:. ::::.:::.
CCDS17 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTM
340 350 360 370 380 390
190 200 210 220 230 240
pF1KE9 LAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSI-CSR
::::::.: ..::::.:...::::: ::.::::: :: .:: .:. :::::.::. : :
CCDS17 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCER
400 410 420 430 440 450
250 260 270 280 290 300
pF1KE9 RGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKR
: ::.::::.:.:.:...::: : .:: :.:..::: : ..:::. ::. ::
CCDS17 R--EGEHDASRRLKTEFLIEFDGV--QSAGDD---RVLVMGATNRPQELDEAVLRRFIKR
460 470 480 490 500
310
pF1KE9 IYIPLPSGMRP
.:. ::.
CCDS17 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE
510 520 530 540 550 560
>>CCDS7386.1 ATAD1 gene_id:84896|Hs108|chr10 (361 aa)
initn: 359 init1: 257 opt: 379 Z-score: 385.4 bits: 79.7 E(32554): 3.8e-15
Smith-Waterman score: 379; 46.1% identity (70.9% similar) in 141 aa overlap (167-307:127-261)
140 150 160 170 180 190
pF1KE9 HRSSAQNVHNDRGKAVRCREKKEQNKGREEKGVLMVGPPGTGKTLLAKAVATECKTTFFN
::::. :::: ::::.:::.: : :.:
CCDS73 DDVITDLKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFIN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE9 VSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAE
.. ::::.:. :::.::. .: .: .:. ::::::::. :..:. :::. .::.
CCDS73 LQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSD-HEATAMMKAQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE9 LLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSGMRP
.. ::. . : : .:.:..::: : :.: :. ::. :..: :.
CCDS73 FMSLWDGL-----DTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILK
220 230 240 250 260 270
CCDS73 LILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRP
280 290 300 310 320 330
311 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:33:24 2016 done: Tue Nov 8 10:33:25 2016
Total Scan time: 1.760 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]