FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9683, 412 aa
  1>>>pF1KE9683 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2973+/-0.000886; mu= 13.3789+/- 0.054
 mean_var=95.7323+/-18.597, 0's: 0 Z-trim(108.5): 9  B-trim: 0 in 0/53
 Lambda= 0.131083
 statistics sampled from 10248 (10251) to 10248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.315), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS31946.1 SKA3 gene_id:221150|Hs108|chr13        ( 412) 2699 520.6 1.1e-147
CCDS53856.1 SKA3 gene_id:221150|Hs108|chr13        ( 388) 2450 473.5 1.5e-133


>>CCDS31946.1 SKA3 gene_id:221150|Hs108|chr13             (412 aa)
 initn: 2699 init1: 2699 opt: 2699  Z-score: 2765.1  bits: 520.6 E(32554): 1.1e-147
Smith-Waterman score: 2699; 99.8% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KE9 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS31 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDVNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KE9 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN
              370       380       390       400       410  

>>CCDS53856.1 SKA3 gene_id:221150|Hs108|chr13             (388 aa)
 initn: 2450 init1: 2450 opt: 2450  Z-score: 2511.0  bits: 473.5 E(32554): 1.5e-133
Smith-Waterman score: 2450; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KE9 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS53 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDVNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KE9 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN
       :::::::::::::                                       
CCDS53 PPEVTKIPEDILQKFQWIYPTQKLNKMR                        
              370       380                                




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:32:00 2016 done: Tue Nov  8 10:32:01 2016
 Total Scan time:  2.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]