FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9681, 121 aa
  1>>>pF1KE9681 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1529+/-0.000879; mu= 6.6712+/- 0.053
 mean_var=84.1153+/-16.859, 0's: 0 Z-trim(107.0): 23  B-trim: 0 in 0/53
 Lambda= 0.139842
 statistics sampled from 9301 (9304) to 9301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.286), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS45747.1 SKA2 gene_id:348235|Hs108|chr17        ( 121)  763 163.1 3.8e-41
CCDS82175.1 SKA2 gene_id:348235|Hs108|chr17        ( 109)  620 134.2 1.7e-32


>>CCDS45747.1 SKA2 gene_id:348235|Hs108|chr17             (121 aa)
 initn: 763 init1: 763 opt: 763  Z-score: 852.2  bits: 163.1 E(32554): 3.8e-41
Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE9 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
               70        80        90       100       110       120

        
pF1KE9 L
       :
CCDS45 L
        

>>CCDS82175.1 SKA2 gene_id:348235|Hs108|chr17             (109 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 697.0  bits: 134.2 E(32554): 1.7e-32
Smith-Waterman score: 620; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE9 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
       :::::::::::::::::::::::::::::::::::::::.                    
CCDS82 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLEVMLSVDSCHH           
               70        80        90       100                    

        
pF1KE9 L




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:30:34 2016 done: Tue Nov  8 10:30:34 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]