FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9662, 354 aa
  1>>>pF1KE9662 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4153+/-0.000697; mu= 11.4202+/- 0.042
 mean_var=86.5558+/-17.284, 0's: 0 Z-trim(111.2): 14  B-trim: 0 in 0/55
 Lambda= 0.137856
 statistics sampled from 12156 (12163) to 12156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.374), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS562.1 KTI12 gene_id:112970|Hs108|chr1          ( 354) 2323 471.4 4.9e-133


>>CCDS562.1 KTI12 gene_id:112970|Hs108|chr1               (354 aa)
 initn: 2323 init1: 2323 opt: 2323  Z-score: 2501.8  bits: 471.4 E(32554): 4.9e-133
Smith-Waterman score: 2323; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KE9 MPLVVFCGLPYSGKSRRAEELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MPLVVFCGLPYSGKSRRAEELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 ALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYCVRPGGPIAGPQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYCVRPGGPIAGPQVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 GANENPGRNVSVSWRPRAEEDGRAQAAGSSVLRELHTADSVVNGSAQADVPKELEREESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GANENPGRNVSVSWRPRAEEDGRAQAAGSSVLRELHTADSVVNGSAQADVPKELEREESG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AAESPALVTPDSEKSAKHGSGAFYSPELLEALTLRFEAPDSRNRWDRPLFTLVGLEEPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AAESPALVTPDSEKSAKHGSGAFYSPELLEALTLRFEAPDSRNRWDRPLFTLVGLEEPLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 LAGIRSALFENRAPPPHQSTQSQPLASGSFLHQLDQVTSQVLAGLMEAQKSAVPGDLLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LAGIRSALFENRAPPPHQSTQSQPLASGSFLHQLDQVTSQVLAGLMEAQKSAVPGDLLTL
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KE9 PGTTEHLRFTRPLTMAELSRLRRQFISYTKMHPNNENLPQLANMFLQYLSQSLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGTTEHLRFTRPLTMAELSRLRRQFISYTKMHPNNENLPQLANMFLQYLSQSLH
              310       320       330       340       350    




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:02:28 2016 done: Sun Nov  6 23:02:29 2016
 Total Scan time:  3.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]