FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9660, 247 aa
  1>>>pF1KE9660 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8965+/-0.00104; mu= 4.4501+/- 0.062
 mean_var=192.9990+/-38.488, 0's: 0 Z-trim(110.6): 19  B-trim: 87 in 2/50
 Lambda= 0.092320
 statistics sampled from 11730 (11740) to 11730 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.361), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS3998.1 CENPH gene_id:64946|Hs108|chr5          ( 247) 1547 217.9 5.2e-57


>>CCDS3998.1 CENPH gene_id:64946|Hs108|chr5               (247 aa)
 initn: 1547 init1: 1547 opt: 1547  Z-score: 1137.0  bits: 217.9 E(32554): 5.2e-57
Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE9 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL
              190       200       210       220       230       240

              
pF1KE9 EKNVDMM
       :::::::
CCDS39 EKNVDMM
              




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:21:51 2016 done: Mon Nov  7 01:21:52 2016
 Total Scan time:  2.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]