FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9659, 222 aa
  1>>>pF1KE9659 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9739+/-0.000878; mu= 7.4627+/- 0.053
 mean_var=117.4765+/-22.969, 0's: 0 Z-trim(109.0): 29  B-trim: 0 in 0/53
 Lambda= 0.118331
 statistics sampled from 10574 (10589) to 10574 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.325), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19       ( 222) 1379 245.8 1.7e-65
CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3         ( 213)  427 83.2 1.4e-16
CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3        ( 172)  346 69.3 1.7e-12


>>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19            (222 aa)
 initn: 1379 init1: 1379 opt: 1379  Z-score: 1289.4  bits: 245.8 E(32554): 1.7e-65
Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KE9 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

              190       200       210       220  
pF1KE9 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
       ::::::::::::::::::::::::::::::::::::::::::
CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
              190       200       210       220  

>>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3              (213 aa)
 initn: 482 init1: 365 opt: 427  Z-score: 411.3  bits: 83.2 E(32554): 1.4e-16
Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-222:1-213)

               10        20        30        40        50        60
pF1KE9 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
CCDS29 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE9 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
CCDS29 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE9 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
CCDS29 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
     120       130       140       150       160       170         

              190       200       210       220  
pF1KE9 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
       . ::.. ::  :. .:   :. :     : ..:..:: :  :
CCDS29 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD
     180       190               200       210   

>>CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3             (172 aa)
 initn: 371 init1: 336 opt: 346  Z-score: 338.0  bits: 69.3 E(32554): 1.7e-12
Smith-Waterman score: 346; 33.3% identity (70.1% similar) in 177 aa overlap (46-222:4-172)

          20        30        40        50        60        70     
pF1KE9 RQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRK
                                     .:::::: :. .: ...::.::. :.   .
CCDS58                            MELEIKKMAKIGNKEACKVLAKQLVHLRKQKTR
                                          10        20        30   

          80        90       100       110       120       130     
pF1KE9 FVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEI
          . ... ..: . ....:. .:: ::. ..:.: ..:...   .  . :..:...   
CCDS58 TFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK
            40        50        60        70        80        90   

         140       150       160       170       180       190     
pF1KE9 MDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGG
       :.: :::.::..:: .   .:::::. .:.:::::.:. .. .... ::.. ::  :. .
CCDS58 MEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTS
           100       110       120       130       140       150   

         200       210       220  
pF1KE9 KKAEAAASALADADADLEERLKNLRRD
       :   :. :     : ..:..:: :  :
CCDS58 K---ATIS-----DEEIERQLKALGVD
                   160       170  




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:54:20 2016 done: Mon Nov  7 18:54:21 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]