FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9658, 211 aa
  1>>>pF1KE9658 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6218+/-0.000359; mu= 11.3868+/- 0.022
 mean_var=62.2489+/-12.941, 0's: 0 Z-trim(113.5): 27  B-trim: 1008 in 1/52
 Lambda= 0.162558
 statistics sampled from 22875 (22888) to 22875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.268), width:  16
 Scan time:  5.330

The best scores are:                                      opt bits E(85289)
NP_006332 (OMIM: 604094) mitotic spindle assembly  ( 211) 1398 336.3 2.2e-92
XP_011538809 (OMIM: 604094) PREDICTED: mitotic spi ( 211) 1398 336.3 2.2e-92
NP_001120797 (OMIM: 604094) mitotic spindle assemb ( 211) 1398 336.3 2.2e-92
NP_002349 (OMIM: 601467) mitotic spindle assembly  ( 205)  178 50.2 2.9e-06


>>NP_006332 (OMIM: 604094) mitotic spindle assembly chec  (211 aa)
 initn: 1398 init1: 1398 opt: 1398  Z-score: 1779.6  bits: 336.3 E(85289): 2.2e-92
Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
              130       140       150       160       170       180

              190       200       210 
pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
       :::::::::::::::::::::::::::::::
NP_006 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
              190       200       210 

>>XP_011538809 (OMIM: 604094) PREDICTED: mitotic spindle  (211 aa)
 initn: 1398 init1: 1398 opt: 1398  Z-score: 1779.6  bits: 336.3 E(85289): 2.2e-92
Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
              130       140       150       160       170       180

              190       200       210 
pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
       :::::::::::::::::::::::::::::::
XP_011 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
              190       200       210 

>>NP_001120797 (OMIM: 604094) mitotic spindle assembly c  (211 aa)
 initn: 1398 init1: 1398 opt: 1398  Z-score: 1779.6  bits: 336.3 E(85289): 2.2e-92
Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
              130       140       150       160       170       180

              190       200       210 
pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
       :::::::::::::::::::::::::::::::
NP_001 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
              190       200       210 

>>NP_002349 (OMIM: 601467) mitotic spindle assembly chec  (205 aa)
 initn: 161 init1: 136 opt: 178  Z-score: 233.5  bits: 50.2 E(85289): 2.9e-06
Smith-Waterman score: 178; 27.0% identity (60.3% similar) in 141 aa overlap (16-152:17-157)

                10        20        30        40        50         
pF1KE9  MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE
                       :... ::.  ... ::: : .::   : . .::.. . ..   :
NP_002 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
               10        20        30        40        50        60

      60        70        80        90        100          110     
pF1KE9 LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSL
       : .:...... .:  : : .:.:.:::: . :   : :.. :.:         :   .. 
NP_002 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KE9 LSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD
        . ... .:. : .:..  . :     .:.: .:..:                       
NP_002 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
              130       140       150       160       170       180

         180       190       200       210 
pF1KE9 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKGS
                                           
NP_002 VRLRSFTTTIHKVNSMVAYKIPVND           
              190       200                




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:31:43 2016 done: Mon Nov  7 22:31:44 2016
 Total Scan time:  5.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]