FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9658, 211 aa
  1>>>pF1KE9658 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8500+/-0.00084; mu= 10.1265+/- 0.050
 mean_var=62.7510+/-12.424, 0's: 0 Z-trim(106.1): 15  B-trim: 0 in 0/51
 Lambda= 0.161906
 statistics sampled from 8767 (8773) to 8767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS134.1 MAD2L2 gene_id:10459|Hs108|chr1          ( 211) 1398 335.0   2e-92


>>CCDS134.1 MAD2L2 gene_id:10459|Hs108|chr1               (211 aa)
 initn: 1398 init1: 1398 opt: 1398  Z-score: 1772.7  bits: 335.0 E(32554): 2e-92
Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH
              130       140       150       160       170       180

              190       200       210 
pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
       :::::::::::::::::::::::::::::::
CCDS13 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS
              190       200       210 




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:31:43 2016 done: Mon Nov  7 22:31:43 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]