FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9657, 169 aa
  1>>>pF1KE9657 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1269+/-0.000913; mu= 12.6678+/- 0.055
 mean_var=56.4841+/-10.916, 0's: 0 Z-trim(103.8): 26  B-trim: 3 in 1/52
 Lambda= 0.170652
 statistics sampled from 7581 (7598) to 7581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.233), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS2975.1 NAA50 gene_id:80218|Hs108|chr3          ( 169) 1126 285.4 1.2e-77
CCDS77791.1 NAA50 gene_id:80218|Hs108|chr3         ( 168) 1109 281.2 2.1e-76


>>CCDS2975.1 NAA50 gene_id:80218|Hs108|chr3               (169 aa)
 initn: 1126 init1: 1126 opt: 1126  Z-score: 1507.7  bits: 285.4 E(32554): 1.2e-77
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE9 MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 CRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 CRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE9 IDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQNADVQKTDN
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 IDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQNADVQKTDN
              130       140       150       160         

>>CCDS77791.1 NAA50 gene_id:80218|Hs108|chr3              (168 aa)
 initn: 1100 init1: 1100 opt: 1109  Z-score: 1485.1  bits: 281.2 E(32554): 2.1e-76
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 169 aa overlap (1-169:1-168)

               10        20        30        40        50        60
pF1KE9 MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVC
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MKG-RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVC
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE9 CRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESA
      60        70        80        90       100       110         

              130       140       150       160         
pF1KE9 IDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQNADVQKTDN
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLKVPSGQNADVQKTDN
     120       130       140       150       160        




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:00:40 2016 done: Sun Nov  6 23:00:40 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]