Result of FASTA (ccds) for
pFN21AE9655
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9655, 128 aa
1>>>pF1KE9655 128 - 128 aa - 128 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0248+/-0.000767; mu= 11.6706+/- 0.046
mean_var=52.9593+/-10.593, 0's: 0 Z-trim(107.7): 34 B-trim: 353 in 2/48
Lambda= 0.176239
statistics sampled from 9677 (9711) to 9677 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.298), width: 16
Scan time: 0.920
The best scores are: opt bits E(32554)
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 802 211.3 1.3e-55
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 789 208.0 1.3e-54
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 662 175.7 6.1e-45
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 626 166.5 3.1e-42
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 455 123.1 4.7e-29
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 455 123.1 4.7e-29
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 455 123.1 4.7e-29
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 455 123.1 4.7e-29
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 455 123.1 4.7e-29
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 455 123.1 4.7e-29
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 452 122.3 8.1e-29
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 452 122.3 8.1e-29
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 451 122.1 9.5e-29
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 451 122.1 9.5e-29
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 451 122.1 9.6e-29
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 446 120.8 2.3e-28
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 445 120.6 2.8e-28
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 443 120.1 4.3e-28
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 404 110.0 2.1e-25
CCDS5498.1 H2AFV gene_id:94239|Hs108|chr7 ( 90) 392 107.0 2.3e-24
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 393 107.5 6.7e-24
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 392 107.3 7.9e-24
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 392 107.3 8e-24
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 392 107.3 8e-24
>>CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 (128 aa)
initn: 802 init1: 802 opt: 802 Z-score: 1111.9 bits: 211.3 E(32554): 1.3e-55
Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
70 80 90 100 110 120
pF1KE9 KKGQQKTV
::::::::
CCDS36 KKGQQKTV
>>CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 (128 aa)
initn: 789 init1: 789 opt: 789 Z-score: 1094.1 bits: 208.0 E(32554): 1.3e-54
Smith-Waterman score: 789; 98.4% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::::
CCDS54 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
70 80 90 100 110 120
pF1KE9 KKGQQKTV
:::::::
CCDS54 KKGQQKTA
>>CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 (114 aa)
initn: 662 init1: 662 opt: 662 Z-score: 920.4 bits: 175.7 E(32554): 6.1e-45
Smith-Waterman score: 662; 98.1% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::::
CCDS54 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGEKRRCS
70 80 90 100 110
pF1KE9 KKGQQKTV
>>CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 (102 aa)
initn: 626 init1: 626 opt: 626 Z-score: 871.7 bits: 166.5 E(32554): 3.1e-42
Smith-Waterman score: 626; 99.0% identity (100.0% similar) in 100 aa overlap (28-127:2-101)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
:::::::::::.:::::::::::::::::::::
CCDS54 MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
10 20 30
70 80 90 100 110 120
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
40 50 60 70 80 90
pF1KE9 KKGQQKTV
:::::::
CCDS54 KKGQQKTA
100
>>CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 (129 aa)
initn: 462 init1: 252 opt: 455 Z-score: 635.1 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 63.4% identity (84.6% similar) in 123 aa overlap (7-127:5-126)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..::...:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
CCDS31 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :.
CCDS31 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQ-QKTV
:: . :::
CCDS31 PKKTESQKTKSK
120
>>CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 (129 aa)
initn: 291 init1: 253 opt: 455 Z-score: 635.1 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :.
CCDS93 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQQKTV
::
CCDS93 PKKTESHKAKSK
120
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 281 init1: 253 opt: 455 Z-score: 635.0 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :.
CCDS30 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQQKTV
::
CCDS30 PKKTESHHKAKGK
120 130
>>CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 (130 aa)
initn: 283 init1: 252 opt: 455 Z-score: 635.0 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..:::..:: .::.::::::::::.:: :.. . :. :::: : :: ::.::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :.
CCDS45 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQQKTV
::
CCDS45 PKKTESHHKAKGK
120 130
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 281 init1: 253 opt: 455 Z-score: 635.0 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..:::..:: :::.::::::::::.:: :.. . .. :::: : :: ::.::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. :.::: :::.:.:. :.
CCDS93 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQQKTV
::
CCDS93 PKKTESHHKAKGK
120 130
>>CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 (130 aa)
initn: 252 init1: 252 opt: 455 Z-score: 635.0 bits: 123.1 E(32554): 4.7e-29
Smith-Waterman score: 455; 65.0% identity (85.5% similar) in 117 aa overlap (7-122:5-120)
10 20 30 40 50 60
pF1KE9 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE
::..:::..:: :::.::::::::::.:: :.. . :. :::: : :: ::.::
CCDS15 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLE
10 20 30 40 50
70 80 90 100 110
pF1KE9 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI
:::::.:::::::..: : :: :::::::::.::::..:. ..::: :::.:.:. :.
CCDS15 YLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLL
60 70 80 90 100 110
120
pF1KE9 GKKGQQKTV
::
CCDS15 PKKTESHHKAKGK
120 130
128 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:53:47 2016 done: Mon Nov 7 18:53:47 2016
Total Scan time: 0.920 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]