Result of FASTA (ccds) for
pFN21AE9634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9634, 1374 aa
1>>>pF1KE9634 1374 - 1374 aa - 1374 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.9133+/-0.00132; mu= -8.0376+/- 0.080
mean_var=707.5752+/-144.272, 0's: 0 Z-trim(114.8): 72 B-trim: 0 in 0/55
Lambda= 0.048216
statistics sampled from 15278 (15331) to 15278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.471), width: 16
Scan time: 5.180
The best scores are: opt bits E(32554)
CCDS47195.1 DROSHA gene_id:29102|Hs108|chr5 (1374) 9674 689.8 1.4e-197
CCDS47194.1 DROSHA gene_id:29102|Hs108|chr5 (1337) 7279 523.2 2e-147
>>CCDS47195.1 DROSHA gene_id:29102|Hs108|chr5 (1374 aa)
initn: 9674 init1: 9674 opt: 9674 Z-score: 3660.6 bits: 689.8 E(32554): 1.4e-197
Smith-Waterman score: 9674; 99.9% identity (99.9% similar) in 1374 aa overlap (1-1374:1-1374)
10 20 30 40 50 60
pF1KE9 MMQGNTCHRMSFHPGRGCPRGRGGHGARPSAPSFRPQNLRLLHPQQPPVQYQYEPPSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMQGNTCHRMSFHPGRGCPRGRGGHGARPSAPSFRPQNLRLLHPQQPPVQYQYEPPSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 TTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQMRHPFPVPPCFPPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQMRHPFPVPPCFPPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSHHNFPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSHHNFPPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 SFNSFQNNPSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SFNSFQNNPSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 GERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDNRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDNRRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 PSLERSYKKEYKRSGRSYGLLVVPEPAGCTPELPGEIIKNTDSWAPPLEIVNHRSPSREK
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS47 PSLERSYKKEYKRSGRSYGLSVVPEPAGCTPELPGEIIKNTDSWAPPLEIVNHRSPSREK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 KRARWEEEKDRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KRARWEEEKDRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSEN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 YYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWEPPKTKLDEDLESS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWEPPKTKLDEDLESS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 KARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE9 FEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE9 DWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE9 NMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE9 QLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE9 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE9 SHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE9 RINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE9 FMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE9 YPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE9 GHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE9 ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWND
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE9 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQA
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370
pF1KE9 EMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREPDETEDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREPDETEDIKK
1330 1340 1350 1360 1370
>>CCDS47194.1 DROSHA gene_id:29102|Hs108|chr5 (1337 aa)
initn: 9399 init1: 6986 opt: 7279 Z-score: 2760.4 bits: 523.2 E(32554): 2e-147
Smith-Waterman score: 9328; 97.2% identity (97.2% similar) in 1374 aa overlap (1-1374:1-1337)
10 20 30 40 50 60
pF1KE9 MMQGNTCHRMSFHPGRGCPRGRGGHGARPSAPSFRPQNLRLLHPQQPPVQYQYEPPSAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMQGNTCHRMSFHPGRGCPRGRGGHGARPSAPSFRPQNLRLLHPQQPPVQYQYEPPSAPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 TTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQMRHPFPVPPCFPPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQMRHPFPVPPCFPPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 PPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSHHNFPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSHHNFPPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 SFNSFQNNPSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SFNSFQNNPSSFLPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 GERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDNRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDNRRS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 PSLERSYKKEYKRSGRSYGLLVVPEPAGCTPELPGEIIKNTDSWAPPLEIVNHRSPSREK
::::::::::::::: :::::::
CCDS47 PSLERSYKKEYKRSGS-------------------------------------RSPSREK
310 320
370 380 390 400 410 420
pF1KE9 KRARWEEEKDRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KRARWEEEKDRWSDNQSSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSEN
330 340 350 360 370 380
430 440 450 460 470 480
pF1KE9 YYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWEPPKTKLDEDLESS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWEPPKTKLDEDLESS
390 400 410 420 430 440
490 500 510 520 530 540
pF1KE9 SESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSA
450 460 470 480 490 500
550 560 570 580 590 600
pF1KE9 KARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYI
510 520 530 540 550 560
610 620 630 640 650 660
pF1KE9 FEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELY
570 580 590 600 610 620
670 680 690 700 710 720
pF1KE9 DWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIA
630 640 650 660 670 680
730 740 750 760 770 780
pF1KE9 NMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPA
690 700 710 720 730 740
790 800 810 820 830 840
pF1KE9 QLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTV
750 760 770 780 790 800
850 860 870 880 890 900
pF1KE9 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHP
810 820 830 840 850 860
910 920 930 940 950 960
pF1KE9 SHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPS
870 880 890 900 910 920
970 980 990 1000 1010 1020
pF1KE9 RINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDR
930 940 950 960 970 980
1030 1040 1050 1060 1070 1080
pF1KE9 FMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN
990 1000 1010 1020 1030 1040
1090 1100 1110 1120 1130 1140
pF1KE9 YPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTL
1050 1060 1070 1080 1090 1100
1150 1160 1170 1180 1190 1200
pF1KE9 GHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA
1110 1120 1130 1140 1150 1160
1210 1220 1230 1240 1250 1260
pF1KE9 ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWND
1170 1180 1190 1200 1210 1220
1270 1280 1290 1300 1310 1320
pF1KE9 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQA
1230 1240 1250 1260 1270 1280
1330 1340 1350 1360 1370
pF1KE9 EMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREPDETEDIKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREPDETEDIKK
1290 1300 1310 1320 1330
1374 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:28:39 2016 done: Sun Nov 6 10:28:40 2016
Total Scan time: 5.180 Total Display time: 0.180
Function used was FASTA [36.3.4 Apr, 2011]