Result of FASTA (omim) for
pFN21AE9622
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9622, 561 aa
1>>>pF1KE9622 561 - 561 aa - 561 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4456+/-0.000426; mu= 5.1939+/- 0.026
mean_var=189.1285+/-39.255, 0's: 0 Z-trim(117.1): 46 B-trim: 1142 in 1/56
Lambda= 0.093260
statistics sampled from 28753 (28799) to 28753 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.338), width: 16
Scan time: 7.710
The best scores are: opt bits E(85289)
XP_011531678 (OMIM: 609168,616201) PREDICTED: shug ( 561) 3695 509.9 8.5e-144
XP_011531679 (OMIM: 609168,616201) PREDICTED: shug ( 561) 3695 509.9 8.5e-144
XP_011531675 (OMIM: 609168,616201) PREDICTED: shug ( 561) 3695 509.9 8.5e-144
NP_001012410 (OMIM: 609168,616201) shugoshin 1 iso ( 561) 3695 509.9 8.5e-144
NP_001186181 (OMIM: 609168,616201) shugoshin 1 iso ( 561) 3695 509.9 8.5e-144
XP_011531677 (OMIM: 609168,616201) PREDICTED: shug ( 561) 3695 509.9 8.5e-144
NP_001186180 (OMIM: 609168,616201) shugoshin 1 iso ( 527) 3422 473.2 9.2e-133
NP_001012409 (OMIM: 609168,616201) shugoshin 1 iso ( 527) 3422 473.2 9.2e-133
NP_001186186 (OMIM: 609168,616201) shugoshin 1 iso ( 215) 1149 167.1 5.2e-41
NP_001186182 (OMIM: 609168,616201) shugoshin 1 iso ( 275) 1142 166.2 1.2e-40
NP_001012411 (OMIM: 609168,616201) shugoshin 1 iso ( 275) 1142 166.2 1.2e-40
NP_001012412 (OMIM: 609168,616201) shugoshin 1 iso ( 309) 1142 166.2 1.3e-40
NP_001186183 (OMIM: 609168,616201) shugoshin 1 iso ( 309) 1142 166.2 1.3e-40
NP_001012413 (OMIM: 609168,616201) shugoshin 1 iso ( 258) 1032 151.4 3.3e-36
NP_001186184 (OMIM: 609168,616201) shugoshin 1 iso ( 258) 1032 151.4 3.3e-36
NP_001186185 (OMIM: 609168,616201) shugoshin 1 iso ( 292) 1032 151.4 3.7e-36
NP_612493 (OMIM: 609168,616201) shugoshin 1 isofor ( 292) 1032 151.4 3.7e-36
>>XP_011531678 (OMIM: 609168,616201) PREDICTED: shugoshi (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
XP_011 EFVSRFPDCRKCKLETHICLR
550 560
>>XP_011531679 (OMIM: 609168,616201) PREDICTED: shugoshi (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
XP_011 EFVSRFPDCRKCKLETHICLR
550 560
>>XP_011531675 (OMIM: 609168,616201) PREDICTED: shugoshi (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
XP_011 EFVSRFPDCRKCKLETHICLR
550 560
>>NP_001012410 (OMIM: 609168,616201) shugoshin 1 isoform (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
NP_001 EFVSRFPDCRKCKLETHICLR
550 560
>>NP_001186181 (OMIM: 609168,616201) shugoshin 1 isoform (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
NP_001 EFVSRFPDCRKCKLETHICLR
550 560
>>XP_011531677 (OMIM: 609168,616201) PREDICTED: shugoshi (561 aa)
initn: 3695 init1: 3695 opt: 3695 Z-score: 2702.6 bits: 509.9 E(85289): 8.5e-144
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
490 500 510 520 530 540
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
:::::::::::::::::::::
XP_011 EFVSRFPDCRKCKLETHICLR
550 560
>>NP_001186180 (OMIM: 609168,616201) shugoshin 1 isoform (527 aa)
initn: 3421 init1: 3421 opt: 3422 Z-score: 2504.5 bits: 473.2 E(85289): 9.2e-133
Smith-Waterman score: 3422; 99.0% identity (99.4% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::: ..
NP_001 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
490 500 510 520
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
>>NP_001012409 (OMIM: 609168,616201) shugoshin 1 isoform (527 aa)
initn: 3421 init1: 3421 opt: 3422 Z-score: 2504.5 bits: 473.2 E(85289): 9.2e-133
Smith-Waterman score: 3422; 99.0% identity (99.4% similar) in 526 aa overlap (1-526:1-526)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::: ..
NP_001 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
490 500 510 520
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
>>NP_001186186 (OMIM: 609168,616201) shugoshin 1 isoform (215 aa)
initn: 1402 init1: 1149 opt: 1149 Z-score: 857.2 bits: 167.1 E(85289): 5.2e-41
Smith-Waterman score: 1149; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGALEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
NP_001 SPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR
190 200 210
>--
initn: 267 init1: 267 opt: 267 Z-score: 215.9 bits: 48.4 E(85289): 2.8e-05
Smith-Waterman score: 267; 100.0% identity (100.0% similar) in 39 aa overlap (523-561:177-215)
500 510 520 530 540 550
pF1KE9 LRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKC
::::::::::::::::::::::::::::::
NP_001 ELPGQGESFQIEDQIPTIPQDTLGVDFDSGALEVSPAKEAIFILYYVREFVSRFPDCRKC
150 160 170 180 190 200
560
pF1KE9 KLETHICLR
:::::::::
NP_001 KLETHICLR
210
>>NP_001186182 (OMIM: 609168,616201) shugoshin 1 isoform (275 aa)
initn: 1142 init1: 1142 opt: 1142 Z-score: 850.6 bits: 166.2 E(85289): 1.2e-40
Smith-Waterman score: 1239; 51.0% identity (51.5% similar) in 526 aa overlap (1-526:1-274)
10 20 30 40 50 60
pF1KE9 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 GMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSA----
130 140 150 160 170
190 200 210 220 230 240
pF1KE9 TDNVLPRTVSVRSSLKKHCNSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPEN
NP_001 ------------------------------------------------------------
250 260 270 280 290 300
pF1KE9 VQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANR
NP_001 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE9 RKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREE
NP_001 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE9 NNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
NP_001 ------------------------------------------------------------
430 440 450 460 470 480
pF1KE9 KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------TPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTA
180 190 200 210 220
490 500 510 520 530 540
pF1KE9 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVR
::::::::::::::::::::::::::::::::::::::::: ..
NP_001 SVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKSMKQIQ
230 240 250 260 270
550 560
pF1KE9 EFVSRFPDCRKCKLETHICLR
561 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:59:26 2016 done: Mon Nov 7 16:59:27 2016
Total Scan time: 7.710 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]