FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9534, 335 aa
  1>>>pF1KE9534 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5791+/-0.000714; mu= 17.4144+/- 0.044
 mean_var=110.1578+/-22.408, 0's: 0 Z-trim(113.2): 57  B-trim: 740 in 1/51
 Lambda= 0.122199
 statistics sampled from 13843 (13903) to 13843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.427), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS100.2 GPR157 gene_id:80045|Hs108|chr1          ( 335) 2260 408.5  4e-114


>>CCDS100.2 GPR157 gene_id:80045|Hs108|chr1               (335 aa)
 initn: 2260 init1: 2260 opt: 2260  Z-score: 2162.4  bits: 408.5 E(32554): 4e-114
Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KE9 MQPSPPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MQPSPPPTELVPSERAVVLLSCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 AASYFYGVLQNFAGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AASYFYGVLQNFAGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEML
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 AYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 STVRFVLTLCGSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STVRFVLTLCGSPAVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRLFSLCCCCCSS
              250       260       270       280       290       300

              310       320       330     
pF1KE9 QPPTKSPAGTPKAPAPSKPGESQESQGTPGELPST
       :::::::::::::::::::::::::::::::::::
CCDS10 QPPTKSPAGTPKAPAPSKPGESQESQGTPGELPST
              310       320       330     




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:33:56 2016 done: Sun Nov  6 06:33:56 2016
 Total Scan time:  2.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]