FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9520, 445 aa
  1>>>pF1KE9520 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9210+/-0.000715; mu= 11.7163+/- 0.043
 mean_var=126.5877+/-25.286, 0's: 0 Z-trim(114.5): 4  B-trim: 2 in 1/51
 Lambda= 0.113993
 statistics sampled from 15055 (15058) to 15055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.463), width:  16
 Scan time:  3.940

The best scores are:                                      opt bits E(32554)
CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8        ( 445) 2976 500.1 1.8e-141
CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17      ( 448) 2541 428.6 6.3e-120
CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20     ( 469)  545 100.3 4.3e-21


>>CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8             (445 aa)
 initn: 2976 init1: 2976 opt: 2976  Z-score: 2653.2  bits: 500.1 E(32554): 1.8e-141
Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGA
              370       380       390       400       410       420

              430       440     
pF1KE9 VAMFPPTSIYHVFHSRKDCADPCDS
       :::::::::::::::::::::::::
CCDS64 VAMFPPTSIYHVFHSRKDCADPCDS
              430       440     

>>CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17           (448 aa)
 initn: 1406 init1: 1406 opt: 2541  Z-score: 2266.5  bits: 428.6 E(32554): 6.3e-120
Smith-Waterman score: 2541; 86.5% identity (93.9% similar) in 446 aa overlap (1-443:1-446)

               10        20        30        40        50        60
pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
       ::::: .: ::::::::::::::::::::::::::::::.::::::::::.::.::::::
CCDS11 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTALLASLWHHVAPVAGQLHSVAFLALAFV
       :::::::::.::::: :::::.:::::..::::::: ::::::::::::::::::.::.:
CCDS11 GLLVVTLWRQLAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPINGT
       ::.:::.:::::::::::::: :::::::::::::::::::::::::::::::::: :::
CCDS11 LAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 PGPPLDFLERFPASTFFWALTALLVASAAAFQGLLLLLPPPPSVPTGELGSGLQVGAPGA
        :::::: :::::::::::::::::.:::::.:::::::  ::: ::  :  ::.:.:::
CCDS11 SGPPLDFPERFPASTFFWALTALLVTSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGA
              190       200       210       220       230       240

                 250       260       270       280       290       
pF1KE9 EEEV---EESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAV
       :::    ::. :::::::::::: :::::.:.::.::..: ::::.: :.:.::::::.:
CCDS11 EEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSV
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KE9 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALA
       :::::::::::::::::::::::::::::::::::::::::: ::::::.. :.::::::
CCDS11 QSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALA
              310       320       330       340       350       360

       360       370       380       390       400       410       
pF1KE9 VLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
       .::::::::::.:::::::::::::: :::::::::::::::::::::::::::::::::
CCDS11 ILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
              370       380       390       400       410       420

       420       430       440     
pF1KE9 LGAVAMFPPTSIYHVFHSRKDCADPCDS
       ::: ::::::::::::.:::::.:::  
CCDS11 LGAGAMFPPTSIYHVFQSRKDCVDPCGP
              430       440        

>>CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20          (469 aa)
 initn: 1086 init1: 512 opt: 545  Z-score: 492.2  bits: 100.3 E(32554): 4.3e-21
Smith-Waterman score: 1049; 43.2% identity (65.3% similar) in 472 aa overlap (11-443:4-467)

               10        20        30        40        50        60
pF1KE9 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
                 : :::: .::::::...::.:::::..: :::::: ::::..:.. :.:.
CCDS13        MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI
                      10        20        30        40        50   

               70        80        90          100       110       
pF1KE9 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTA---LLASLWHHVAPVAGQLHSVAFLAL
       : :.::: ... :.   .::: .  .:: :::.   ..: ::. .. :    ::.:::.:
CCDS13 GPLLVTLLHHFRPSCLSEVPI-IFTLLG-VGTVTCIIFAFLWNMTSWVLDGHHSIAFLVL
            60        70         80         90       100       110 

       120       130       140       150       160       170       
pF1KE9 AFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLEC-----
       .: :::. :.:.::::::.:.::  .: .::.:.:::.::: ..::.:: :   :     
CCDS13 TFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTE
             120       130       140       150       160       170 

                                180          190            200    
pF1KE9 -----P-PAP--------------INGTPG--PPLDFLE-RF-PAS----TFFWALTALL
            : :.:              ... ::   ::. :: :. ::     .::  :. ..
CCDS13 ISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMM
             180       190       200       210       220       230 

          210       220          230       240       250       260 
pF1KE9 VASAAAFQGLLLLLPP---PPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTT
       .   .::  ..:   :     ::    :.. . . .   .:: . .       ::. :  
CCDS13 ACCLVAF--FVLQRQPRCWEASVED-LLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYL
               240       250        260       270       280        

             270       280       290       300       310       320 
pF1KE9 PGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAAN
          . ::     :. : .  :.: .::::::.::.::..::: :: .:::::..:. .::
CCDS13 ---EEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN
         290       300       310       320       330       340     

             330       340       350       360       370       380 
pF1KE9 PLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVL
       ::: ...: .  :::  :: ::.::.  ::: ::.::.:::: : :  .: ::.: ::::
CCDS13 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL
         350       360       370       380       390       400     

             390       400       410       420       430       440 
pF1KE9 CLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCAD
         : .:::::  . .:.  .: :::  :.:.:.::::::. ::: ... ..: :   :  
CCDS13 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL
         410       420       430       440       450       460     

           
pF1KE9 PCDS
        :  
CCDS13 HCPA
           




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:32:27 2016 done: Sun Nov  6 06:32:28 2016
 Total Scan time:  3.940 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]