FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9514, 395 aa
  1>>>pF1KE9514 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0076+/-0.000935; mu= 18.4155+/- 0.056
 mean_var=61.9703+/-13.067, 0's: 0 Z-trim(104.1): 54  B-trim: 424 in 1/48
 Lambda= 0.162923
 statistics sampled from 7688 (7733) to 7688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.238), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19       ( 395) 2673 637.1 8.4e-183
CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19       ( 301) 1130 274.3   1e-73
CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19        ( 353)  827 203.1 3.2e-52


>>CCDS12862.1 VN1R2 gene_id:317701|Hs108|chr19            (395 aa)
 initn: 2673 init1: 2673 opt: 2673  Z-score: 3395.3  bits: 637.1 E(32554): 8.4e-183
Smith-Waterman score: 2673; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE9 MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 SFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 PRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 CLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 NNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAALIIACFP
              310       320       330       340       350       360

              370       380       390     
pF1KE9 TISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
       :::::::::::::::::::::::::::::::::::
CCDS12 TISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
              370       380       390     

>>CCDS33099.1 VN1R4 gene_id:317703|Hs108|chr19            (301 aa)
 initn: 1111 init1: 1111 opt: 1130  Z-score: 1437.0  bits: 274.3 E(32554): 1e-73
Smith-Waterman score: 1130; 57.1% identity (80.6% similar) in 294 aa overlap (85-378:3-296)

           60        70        80        90       100       110    
pF1KE9 VPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFL
                                     .. :..   : :.:::.::.::.: .:. .
CCDS33                             MASRYVAVGMILSQTVVGVLGSFSVLLHYLSF
                                           10        20        30  

          120       130       140       150       160       170    
pF1KE9 YFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRG
       :  : . ::::::..:: ::. :..  : .:.:::.::...: : .:::...: ::::::
CCDS33 YCTGCRLRSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRVGRG
             40        50        60        70        80        90  

          180       190       200       210       220       230    
pF1KE9 VSIGSTCLLSVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGK
       ::::.:::::::::::.. :.::::..: ::: ..:.: .:::   :::: :::.:.:::
CCDS33 VSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGK
            100       110       120       130       140       150  

          240       250       260       270       280       290    
pF1KE9 WSNNNITKKGDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQ
       :. .::: . ::::::.  ........ : : :: ::::::::::.:::.: .:.::::.
CCDS33 WNYTNITVNEDLGYCSGGGNNKIAQTLRAMLLSFPDVLCLGLMLWVSSSMVCILHRHKQR
            160       170       180       190       200       210  

          300       310       320       330       340       350    
pF1KE9 VQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWWLVNTAAL
       :::: :.:: : .:: ::: :::: :::::.  :.:: .  : .::.:: .  ::::.::
CCDS33 VQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDNPNSLLVNTSAL
            220       230       240       250       260       270  

          360       370       380       390     
pF1KE9 IIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM
       . .::::.::::::  :::  :.:                 
CCDS33 MSVCFPTLSPFVLMSCDPSVYRFCFAWKR            
            280       290       300             

>>CCDS12951.1 VN1R1 gene_id:57191|Hs108|chr19             (353 aa)
 initn: 773 init1: 507 opt: 827  Z-score: 1051.0  bits: 203.1 E(32554): 3.2e-52
Smith-Waterman score: 827; 43.2% identity (71.0% similar) in 303 aa overlap (94-395:53-352)

            70        80        90       100       110       120   
pF1KE9 SSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRS
                                     :.:. ::::::  :: .: .. : :.: : 
CCDS12 STDSSDLNENQHPLDFDEMAFGKVKSGISFLIQTGVGILGNSFLLCFYNLILFTGHKLRP
             30        40        50        60        70        80  

           130       140       150       160       170       180   
pF1KE9 TDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLL
       ::::: .:..:.:.:.. : ::.:::.::::.. :  ::::..: ::::  ::... :::
CCDS12 TDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRVGTRVSLSTICLL
             90       100       110       120       130       140  

           190       200       210       220       230       240   
pF1KE9 SVFQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKK
       . ::.: .::   :: :.:...: .: .  .:::: :.:.::   . ..:  ...: . :
CCDS12 NGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLVNGPLNSKNSSAK
            150       160       170       180       190       200  

           250       260       270       280       290       300   
pF1KE9 GDLGYCSAPLSDEVTKSVYAALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRNNL
       .. ::::   : . . :..:.:    : . ::.:.:::.:.:. ::::::::::   : :
CCDS12 NNYGYCSYKASKRFS-SLHAVLYFSPDFMSLGFMVWASGSMVFFLYRHKQQVQHNHSNRL
            210        220       230       240       250       260 

           310       320       330        340       350       360  
pF1KE9 YPNSSPGNRAIQSILALVSTFALCYAL-SFITYVYLALFDNSSWWLVNTAALIIACFPTI
           :   :: ..:..:::.: . :.. ::.: .. ..  : . :.:....:. .:::. 
CCDS12 SCRPSQEARATHTIMVLVSSFFVFYSVHSFLT-IWTTVVANPGQWIVTNSVLVASCFPAR
             270       280       290        300       310       320

            370       380       390      
pF1KE9 SPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM 
       :::::.  :   :..: . ::  . .: ..  : 
CCDS12 SPFVLIMSDTHISQFC-FACRTRKTLFPNLVVMP
              330        340       350   




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:13:47 2016 done: Sun Nov  6 13:13:48 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]