FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9458, 731 aa
  1>>>pF1KE9458 731 - 731 aa - 731 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5804+/-0.000899; mu= 15.0995+/- 0.055
 mean_var=108.7388+/-22.563, 0's: 0 Z-trim(109.0): 47  B-trim: 519 in 1/50
 Lambda= 0.122993
 statistics sampled from 10558 (10600) to 10558 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS43162.1 GPR149 gene_id:344758|Hs108|chr3       ( 731) 4828 867.8       0


>>CCDS43162.1 GPR149 gene_id:344758|Hs108|chr3            (731 aa)
 initn: 4828 init1: 4828 opt: 4828  Z-score: 4632.6  bits: 867.8 E(32554):    0
Smith-Waterman score: 4828; 100.0% identity (100.0% similar) in 731 aa overlap (1-731:1-731)

               10        20        30        40        50        60
pF1KE9 MSLFLSNLSTNDSSLWKENHNSTDLLNPPGTLNIYLFCLTCLMTFAALVGSIYSLISLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSLFLSNLSTNDSSLWKENHNSTDLLNPPGTLNIYLFCLTCLMTFAALVGSIYSLISLLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 MQNRTVVSMLVASWSVDDLMSVLSVTIFMFLQWPNEVPGYFQFLCTTSALMYLCQGLSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MQNRTVVSMLVASWSVDDLMSVLSVTIFMFLQWPNEVPGYFQFLCTTSALMYLCQGLSSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LKATLLVSYNFYTMHRGVGSQTASRRSGQVLGVVLTVWAASLLLSALPLCGWGAFVRTPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKATLLVSYNFYTMHRGVGSQTASRRSGQVLGVVLTVWAASLLLSALPLCGWGAFVRTPW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 GCLVDCSSSYVLFLSIVYALAFGLLVGLSVPLTHRLLCSEEPPRLHSNYQEISRGASIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GCLVDCSSSYVLFLSIVYALAFGLLVGLSVPLTHRLLCSEEPPRLHSNYQEISRGASIPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TPPTAGRVVSLSPEDAPGPSLRRSGGCSPSSDTVFGPGAPAAAGAEACRRENRGTLYGTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPPTAGRVVSLSPEDAPGPSLRRSGGCSPSSDTVFGPGAPAAAGAEACRRENRGTLYGTR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 SFTVSVAQKRFALILALTKVVLWLPMMMHMVVQNVVGFQSLPLETFSFLLTLLATTVTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SFTVSVAQKRFALILALTKVVLWLPMMMHMVVQNVVGFQSLPLETFSFLLTLLATTVTPV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 FVLSKRWTHLPCGCIINCRQNAYAVASDGKKIKRKGFEFNLSFQKSYGIYKIAHEDYYDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FVLSKRWTHLPCGCIINCRQNAYAVASDGKKIKRKGFEFNLSFQKSYGIYKIAHEDYYDD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 DENSIFYHNLMNSECETTKDPQRDNRNIFNAIKVEISTTPSLDSSTQRGINKCTNTDITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DENSIFYHNLMNSECETTKDPQRDNRNIFNAIKVEISTTPSLDSSTQRGINKCTNTDITE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 AKQDSNNKKDAFSDKTGGDINYEETTFSEGPERRLSHEESQKPDLSDWEWCRSKSERTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AKQDSNNKKDAFSDKTGGDINYEETTFSEGPERRLSHEESQKPDLSDWEWCRSKSERTPR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 QRSGYALAIPLCAFQGTVSLHAPTGKTLSLSTYEVSAEGQKITPASKKIEVYRSKSVGHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRSGYALAIPLCAFQGTVSLHAPTGKTLSLSTYEVSAEGQKITPASKKIEVYRSKSVGHE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE9 PNSEDSSSTFVDTSVKIHLEVLEICDNEEALDTVSIISNISQSSTQVRSPSLRYSRKENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PNSEDSSSTFVDTSVKIHLEVLEICDNEEALDTVSIISNISQSSTQVRSPSLRYSRKENR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE9 FVSCDLGETASYSLFLPTSNPDGDINISIPDTVEAHRQNSKRQHQERDGYQEEIQLLNKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FVSCDLGETASYSLFLPTSNPDGDINISIPDTVEAHRQNSKRQHQERDGYQEEIQLLNKA
              670       680       690       700       710       720

              730 
pF1KE9 YRKREEESKGS
       :::::::::::
CCDS43 YRKREEESKGS
              730 




731 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:47:38 2016 done: Sun Nov  6 06:47:38 2016
 Total Scan time:  2.970 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]