FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9416, 540 aa
  1>>>pF1KE9416 540 - 540 aa - 540 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5535+/-0.00102; mu= 18.0573+/- 0.061
 mean_var=92.9111+/-21.205, 0's: 0 Z-trim(105.7): 73  B-trim: 549 in 1/49
 Lambda= 0.133058
 statistics sampled from 8496 (8549) to 8496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.263), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS1849.1 GPR75 gene_id:10936|Hs108|chr2          ( 540) 3582 698.3 5.7e-201


>>CCDS1849.1 GPR75 gene_id:10936|Hs108|chr2               (540 aa)
 initn: 3582 init1: 3582 opt: 3582  Z-score: 3721.6  bits: 698.3 E(32554): 5.7e-201
Smith-Waterman score: 3582; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KE9 MNSTGHLQDAPNATSLHVPHSQEGNSTSLQEGLQDLIHTATLVTCTFLLAVIFCLGSYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MNSTGHLQDAPNATSLHVPHSQEGNSTSLQEGLQDLIHTATLVTCTFLLAVIFCLGSYGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 FIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICGVTAPMFTFVLFFSSASSIPDAFCFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FIVFLSFFDPAFRKFRTNFDFMILNLSFCDLFICGVTAPMFTFVLFFSSASSIPDAFCFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 FHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTVLLTLLLWATSFTLATLAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 FHLTSSGFIIMSLKTVAVIALHRLRMVLGKQPNRTASFPCTVLLTLLLWATSFTLATLAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LKTSKSHLCLPMSSLIAGKGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAQVRKCPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LKTSKSHLCLPMSSLIAGKGKAILSLYVVDFTFCVAVVSVSYIMIAQTLRKNAQVRKCPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 VITVDASRPQPFMGVPVQGGGDPIQCAMPALYRNQNYNKLQHVQTRGYTKSPNQLVTPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VITVDASRPQPFMGVPVQGGGDPIQCAMPALYRNQNYNKLQHVQTRGYTKSPNQLVTPAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 SRLQLVSAINLSTAKDSKAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SRLQLVSAINLSTAKDSKAVVTCVIIVLSVLVCCLPLGISLVQVVLSSNGSFILYQFELF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 GFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLQYIGLGFFCCKQKTRLRAMGKGNLEVNRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GFTLIFFKSGLNPFIYSRNSAGLRRKVLWCLQYIGLGFFCCKQKTRLRAMGKGNLEVNRN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 KSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESMVSPKISAGHQHCGQSSSTPINTRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KSSHHETNSAYMLSPKPQKKFVDQACGPSHSKESMVSPKISAGHQHCGQSSSTPINTRIE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 PYYSIYNSSPSQEESSPCNLQPVNSFGFANSYIAMHYHTTNDLVQEYDSTSAKQIPVPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PYYSIYNSSPSQEESSPCNLQPVNSFGFANSYIAMHYHTTNDLVQEYDSTSAKQIPVPSV
              490       500       510       520       530       540




540 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:28:51 2016 done: Sun Nov  6 18:28:52 2016
 Total Scan time:  3.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]