FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9414, 361 aa
  1>>>pF1KE9414 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2547+/-0.0011; mu= 16.3856+/- 0.066
 mean_var=185.8110+/-86.600, 0's: 0 Z-trim(103.9): 194  B-trim: 1030 in 2/47
 Lambda= 0.094089
 statistics sampled from 7178 (7638) to 7178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.235), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS30941.1 GPR52 gene_id:9293|Hs108|chr1          ( 361) 2484 350.7 1.2e-96
CCDS6849.1 GPR21 gene_id:2844|Hs108|chr9           ( 349) 1595 230.0 2.4e-60


>>CCDS30941.1 GPR52 gene_id:9293|Hs108|chr1               (361 aa)
 initn: 2484 init1: 2484 opt: 2484  Z-score: 1848.9  bits: 350.7 E(32554): 1.2e-96
Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE9 MNESRWTEWRILNMSSGIVNVSERHSCPLGFGHYSVVDVCIFETVVIVLLTFLIIAGNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MNESRWTEWRILNMSSGIVNVSERHSCPLGFGHYSVVDVCIFETVVIVLLTFLIIAGNLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 VIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTLSLLHYSTGVHESLTCQVFGYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTLSLLHYSTGVHESLTCQVFGYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 ISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 GKPGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIFKICRQHTKEINDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GKPGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIFKICRQHTKEINDR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 RARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 LTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCMCVKDQEAQEPKPRKRANSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCMCVKDQEAQEPKPRKRANSCS
              310       320       330       340       350       360

        
pF1KE9 I
       :
CCDS30 I
        

>>CCDS6849.1 GPR21 gene_id:2844|Hs108|chr9                (349 aa)
 initn: 1591 init1: 1140 opt: 1595  Z-score: 1196.8  bits: 230.0 E(32554): 2.4e-60
Smith-Waterman score: 1595; 67.5% identity (85.8% similar) in 345 aa overlap (20-361:8-349)

               10        20        30        40        50        60
pF1KE9 MNESRWTEWRILNMSSGIVNVSERHSCPLGFGHYSVVDVCIFETVVIVLLTFLIIAGNLT
                          : : .  : :.::.  .:. :..:...::.:: :::.::. 
CCDS68             MNSTLDGNQSSHPFCLLAFGYLETVNFCLLEVLIIVFLTVLIISGNII
                           10        20        30        40        

               70        80        90       100       110       120
pF1KE9 VIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTLSLLHYSTGVHESLTCQVFGYI
       :::::::::::.:.::::::::::::::::::::.::.:::::.   :.::::::.::..
CCDS68 VIFVFHCAPLLNHHTTSYFIQTMAYADLFVGVSCVVPSLSLLHHPLPVEESLTCQIFGFV
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KE9 ISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGW
       .::::::::: :::::.:::.::::::.:: :::: :::.::.:::.:: :.:::::: :
CCDS68 VSVLKSVSMASLACISIDRYIAITKPLTYNTLVTPWRLRLCIFLIWLYSTLVFLPSFFHW
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KE9 GKPGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIFKICRQHTKEINDR
       ::::::::.:.::: :: :..::: ::: .::::::..::::::.::.::.::::.:..:
CCDS68 GKPGYHGDVFQWCAESWHTDSYFTLFIVMMLYAPAALIVCFTYFNIFRICQQHTKDISER
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KE9 RARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSF
       .::: :.  ... :.   ::.::::::::::::::.::::::::::::::   .:   ::
CCDS68 QARFSSQSGETG-EVQACPDKRYAMVLFRITSVFYILWLPYIIYFLLESSTGHSNRFASF
      230       240        250       260       270       280       

              310       320       330       340       350          
pF1KE9 LTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCMCVKDQEAQEP---KPRKRAN
       ::::::::::::::::::::::::. ::.::: .:::::  ...  :..:   . .   :
CCDS68 LTTWLAISNSFCNCVIYSLSNSVFQRGLKRLSGAMCTSC--ASQTTANDPYTVRSKGPLN
       290       300       310       320         330       340     

       360 
pF1KE9 SCSI
       .: :
CCDS68 GCHI
           




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:40:38 2016 done: Sun Nov  6 12:40:38 2016
 Total Scan time:  2.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]