FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9406, 470 aa
  1>>>pF1KE9406 470 - 470 aa - 470 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6176+/-0.00109; mu= -13.6319+/- 0.066
 mean_var=500.0904+/-108.336, 0's: 0 Z-trim(115.5): 104  B-trim: 1614 in 2/51
 Lambda= 0.057352
 statistics sampled from 15939 (16039) to 15939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.493), width:  16
 Scan time:  3.810

The best scores are:                                      opt bits E(32554)
CCDS8165.1 GPR152 gene_id:390212|Hs108|chr11       ( 470) 3245 282.8 5.3e-76


>>CCDS8165.1 GPR152 gene_id:390212|Hs108|chr11            (470 aa)
 initn: 3245 init1: 3245 opt: 3245  Z-score: 1478.0  bits: 282.8 E(32554): 5.3e-76
Smith-Waterman score: 3245; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KE9 MDTTMEADLGATGHRPRTELDDEDSYPQGGWDTVFLVALLLLGLPANGLMAWLAGSQARH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDTTMEADLGATGHRPRTELDDEDSYPQGGWDTVFLVALLLLGLPANGLMAWLAGSQARH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GAGTRLALLLLSLALSDFLFLAAAAFQILEIRHGGHWPLGTAACRFYYFLWGVSYSSGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GAGTRLALLLLSLALSDFLFLAAAAFQILEIRHGGHWPLGTAACRFYYFLWGVSYSSGLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LLAALSLDRCLLALCPHWYPGHRPVRLPLWVCAGVWVLATLFSVPWLVFPEAAVWWYDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LLAALSLDRCLLALCPHWYPGHRPVRLPLWVCAGVWVLATLFSVPWLVFPEAAVWWYDLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 ICLDFWDSEELSLRMLEVLGGFLPFLLLLVCHVLTQATACRTCHRQQQPAACRGFARVAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ICLDFWDSEELSLRMLEVLGGFLPFLLLLVCHVLTQATACRTCHRQQQPAACRGFARVAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TILSAYVVLRLPYQLAQLLYLAFLWDVYSGYLLWEALVYSDYLILLNSCLSPFLCLMASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TILSAYVVLRLPYQLAQLLYLAFLWDVYSGYLLWEALVYSDYLILLNSCLSPFLCLMASA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 DLRTLLRSVLSSFAAALCEERPGSFTPTEPQTQLDSEGPTLPEPMAEAQSQMDPVAQPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DLRTLLRSVLSSFAAALCEERPGSFTPTEPQTQLDSEGPTLPEPMAEAQSQMDPVAQPQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 NPTLQPRSDPTAQPQLNPTAQPQSDPTAQPQLNLMAQPQSDSVAQPQADTNVQTPAPAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NPTLQPRSDPTAQPQLNPTAQPQSDPTAQPQLNLMAQPQSDSVAQPQADTNVQTPAPAAS
              370       380       390       400       410       420

              430       440       450       460       470
pF1KE9 SVPSPCDEASPTPSSHPTPGALEDPATPPASEGESPSSTPPEAAPGAGPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SVPSPCDEASPTPSSHPTPGALEDPATPPASEGESPSSTPPEAAPGAGPT
              430       440       450       460       470




470 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:08:16 2016 done: Sun Nov  6 15:08:17 2016
 Total Scan time:  3.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]