FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9403, 494 aa
  1>>>pF1KE9403 494 - 494 aa - 494 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4984+/-0.00081; mu= 10.3097+/- 0.049
 mean_var=234.0949+/-63.105, 0's: 0 Z-trim(114.6): 128  B-trim: 1732 in 2/49
 Lambda= 0.083826
 statistics sampled from 14999 (15174) to 14999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.466), width:  16
 Scan time:  3.900

The best scores are:                                      opt bits E(32554)
CCDS9738.1 GPR135 gene_id:64582|Hs108|chr14        ( 494) 3288 410.6  2e-114


>>CCDS9738.1 GPR135 gene_id:64582|Hs108|chr14             (494 aa)
 initn: 3288 init1: 3288 opt: 3288  Z-score: 2167.8  bits: 410.6 E(32554): 2e-114
Smith-Waterman score: 3288; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KE9 MEEPQPPRPPASMALLGSQHSGAPSAAGPPGGTSSAATAAVLSFSTVATAALGNLSDASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEEPQPPRPPASMALLGSQHSGAPSAAGPPGGTSSAATAAVLSFSTVATAALGNLSDASG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GGTAAAPGGGGLGGSGAAREAGAAVRRPLGPEAAPLLSHGAAVAAQALVLLLIFLLSSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GGTAAAPGGGGLGGSGAAREAGAAVRRPLGPEAAPLLSHGAAVAAQALVLLLIFLLSSLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 NCAVMGVIVKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLDLFTPPGGSAPAAAAGPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 NCAVMGVIVKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLDLFTPPGGSAPAAAAGPW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 RGFCAASRFFSSCFGIVSTLSVALISLDRYCAIVRPPREKIGRRRALQLLAGAWLTALGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RGFCAASRFFSSCFGIVSTLSVALISLDRYCAIVRPPREKIGRRRALQLLAGAWLTALGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 SLPWELLGAPRELAAAQSFHGCLYRTSPDPAQLGAAFSVGLVVACYLLPFLLMCFCHYHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLPWELLGAPRELAAAQSFHGCLYRTSPDPAQLGAAFSVGLVVACYLLPFLLMCFCHYHI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 CKTVRLSDVRVRPVNTYARVLRFFSEVRTATTVLIMIVFVICCWGPYCFLVLLAAARQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 CKTVRLSDVRVRPVNTYARVLRFFSEVRTATTVLIMIVFVICCWGPYCFLVLLAAARQAQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 TMQAPSLLSVVAVWLTWANGAINPVIYAIRNPNISMLLGRNREEGYRTRNVDAFLPSQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TMQAPSLLSVVAVWLTWANGAINPVIYAIRNPNISMLLGRNREEGYRTRNVDAFLPSQGP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 GLQARSRSRLRNRYANRLGACNRMSSSNPASGVAGDVAMWARKNPVVLFCREGPPEPVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GLQARSRSRLRNRYANRLGACNRMSSSNPASGVAGDVAMWARKNPVVLFCREGPPEPVTA
              430       440       450       460       470       480

              490    
pF1KE9 VTKQPKSEAGDTSL
       ::::::::::::::
CCDS97 VTKQPKSEAGDTSL
              490    




494 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:54:15 2016 done: Mon Nov  7 03:54:15 2016
 Total Scan time:  3.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]