FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9278, 63 aa
  1>>>pF1KE9278 63 - 63 aa - 63 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5333+/-0.000464; mu= 10.0988+/- 0.028
 mean_var=48.0069+/- 9.572, 0's: 0 Z-trim(114.5): 5  B-trim: 4 in 1/51
 Lambda= 0.185107
 statistics sampled from 15029 (15033) to 15029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.462), width:  16
 Scan time:  0.990

The best scores are:                                      opt bits E(32554)
CCDS32772.1 CENPX gene_id:201254|Hs108|chr17       (  63)  397 112.2 2.2e-26
CCDS59302.1 CENPX gene_id:201254|Hs108|chr17       (  58)  345 98.3   3e-22
CCDS59303.1 CENPX gene_id:201254|Hs108|chr17       (  81)  206 61.3   6e-11


>>CCDS32772.1 CENPX gene_id:201254|Hs108|chr17            (63 aa)
 initn: 397 init1: 397 opt: 397  Z-score: 587.3  bits: 112.2 E(32554): 2.2e-26
Smith-Waterman score: 397; 98.4% identity (100.0% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS32 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRVDVDQLEKVLPQLL
               10        20        30        40        50        60

          
pF1KE9 LDF
       :::
CCDS32 LDF
          

>>CCDS59302.1 CENPX gene_id:201254|Hs108|chr17            (58 aa)
 initn: 361 init1: 345 opt: 345  Z-score: 512.8  bits: 98.3 E(32554): 3e-22
Smith-Waterman score: 345; 96.4% identity (100.0% similar) in 56 aa overlap (1-56:1-56)

               10        20        30        40        50        60
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRADVDQLEKVLPQLL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::.:    
CCDS59 MEGAGAGSGFRKELVSRLLHLHFKDDKTKEAAVRGVRQAQAEDALRVDVDQLEKLLDF  
               10        20        30        40        50          

          
pF1KE9 LDF

>>CCDS59303.1 CENPX gene_id:201254|Hs108|chr17            (81 aa)
 initn: 383 init1: 206 opt: 206  Z-score: 310.0  bits: 61.3 E(32554): 6e-11
Smith-Waterman score: 351; 76.5% identity (77.8% similar) in 81 aa overlap (1-63:1-81)

               10        20                          30        40  
pF1KE9 MEGAGAGSGFRKELVSRLLHLHFKDDKTK------------------EAAVRGVRQAQAE
       :::::::::::::::::::::::::::::                  :::::::::::::
CCDS59 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAE
               10        20        30        40        50        60

             50        60   
pF1KE9 DALRADVDQLEKVLPQLLLDF
       ::::.::::::::::::::::
CCDS59 DALRVDVDQLEKVLPQLLLDF
               70        80 




63 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:16:33 2016 done: Tue Nov  8 10:16:34 2016
 Total Scan time:  0.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]